View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_high_12 (Length: 327)
Name: NF17687_high_12
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 39 - 309
Target Start/End: Original strand, 40062803 - 40063073
Alignment:
| Q |
39 |
ttgatcaaagactatttattagtcttaatggagattgattgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtc |
138 |
Q |
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| T |
40062803 |
ttgatcaaagactatttattagtcttaatggagattgattgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtc |
40062902 |
T |
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| Q |
139 |
cagtggaagttccgaaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccct |
238 |
Q |
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| T |
40062903 |
cagtggaagttccgaaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccct |
40063002 |
T |
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| Q |
239 |
ttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaatgttttttggtactaaccaat |
309 |
Q |
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| T |
40063003 |
ttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaatgttttttggtactaaccaat |
40063073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 40093424 - 40093704
Alignment:
| Q |
20 |
atcaggtcagtcttaacttttgatcaaagactatttattagtcttaatggagattgattgttaatggagttaattctattgatacaggttggcctaaaag |
119 |
Q |
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| T |
40093424 |
atcaggtcagtcttcacttttgatcgaagactatttgttagtcttac---------atagttaatggagttaattcttttgatacaggttggcctaaaag |
40093514 |
T |
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| Q |
120 |
gtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttatt |
219 |
Q |
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| T |
40093515 |
gtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaatt |
40093614 |
T |
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| Q |
220 |
ttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccactatatgaaaaatgttttttggtactaaccaat |
309 |
Q |
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| T |
40093615 |
ttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaat |
40093704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 76 - 309
Target Start/End: Original strand, 40081190 - 40081424
Alignment:
| Q |
76 |
attgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctact |
175 |
Q |
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| T |
40081190 |
attgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctact |
40081289 |
T |
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| Q |
176 |
ttccctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgcc |
275 |
Q |
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| T |
40081290 |
taccctaagaaccaaccattggtttggtacaaggtagttttattttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgcc |
40081389 |
T |
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| Q |
276 |
actatatgaaaaatg-ttttttggtactaaccaat |
309 |
Q |
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| T |
40081390 |
actatatgaaaaatgtttttttgctactaaccaat |
40081424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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