View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_high_3 (Length: 600)
Name: NF17687_high_3
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Complemental strand, 50803115 - 50802544
Alignment:
| Q |
18 |
ttgttctggtttcttttatatgcaaatgaacccgtgagtgagtatgtgtatgagaagcactacatattcaattaaagattttccactattttgtcgtttg |
117 |
Q |
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| T |
50803115 |
ttgttctggtttcttttatatgcaaatgaacccgtgagtgagtatgtgtatgagaagcgctacatattcaattaaagattttccactattttgtcgtttg |
50803016 |
T |
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| Q |
118 |
agtggagccaatcagttgcttgctgtggtccaaccaaatattcagaccttggtaagatgtgtaaggcctttatttcgttatcttagaaattgtaaacgaa |
217 |
Q |
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| T |
50803015 |
agtggagccaatcagttgcttgctgtggtccaaccaaatattcagaccttggtaagatgtgtaaggcctttatttcgttatcttagaaattgtaaacgaa |
50802916 |
T |
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| Q |
218 |
tgactcaaaattgctgatatgatagagcaatctacaactccaagtatcacaaatgatgacagtactgttgattattgagtttcagtttaagataaaataa |
317 |
Q |
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| T |
50802915 |
tgactcaaaattgctgatatgatagagcaatctccaactccaagtatcactaatgatgacagttctgttgattattgagtttcagtttaagataaaataa |
50802816 |
T |
|
| Q |
318 |
aatttaaattgatctactcatttcttttgttcaagtcacaatgagcttaattctctctctttacacaaaattacgagttcaagttttgtgagaaaaaagt |
417 |
Q |
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| T |
50802815 |
aatttaaattgatctactcatttcttttgttcaagtcacaatgagcttaattcactctctttacacaaaattacgagttcaagttttgtgagagaaaagt |
50802716 |
T |
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| Q |
418 |
ttaatgaatttcattaataatgcgatgatgaacgtaagagatagatgttcgttctagctagagaatgggcactatcattagctgatcatctagttaaaac |
517 |
Q |
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| T |
50802715 |
ttaatgaatttcattaataatgcgatgatgaacgtaagagatagat----gttctagctagagaatgggcaatatcattagctgatcatctagttaaaac |
50802620 |
T |
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| Q |
518 |
aacttgatagttgttgtttaaatatcttaacaaggatctacgttcaagcactaaagatctatgtttagtataatct |
593 |
Q |
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| T |
50802619 |
aacttgatagttgttgtgtaaatatcttaacaaggatctacgttcaagcactaaagatctatgtttagtataatct |
50802544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 534
Target Start/End: Complemental strand, 28145034 - 28144970
Alignment:
| Q |
470 |
tctagctagagaatgggcactatcattagctgatcatctagttaaaacaacttgatagttgttgt |
534 |
Q |
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| T |
28145034 |
tctagttagagaatgagcactatcacttgctgattgtctagcaaaaacaacttaatagttgttgt |
28144970 |
T |
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