View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17687_high_5 (Length: 519)
Name: NF17687_high_5
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Original strand, 48166607 - 48167093
Alignment:
| Q |
16 |
aggtgaaaatagactaggttaaactttgctaggctgaacatgacttgctttgaaaatgttaggcttcaatctgtcctattagtctgccataggctcattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48166607 |
aggtgaaaatagactaggttaaactttgctaggctgaacatgacttactttgaaaatgttaggcttcaatctgtcctattagtctgccataggctcattt |
48166706 |
T |
|
| Q |
116 |
ttaaggtttgacctgactttttggtaagtccgtttaatagtctatttcacgannnnnnnngacgaaaaatatacaccactaataatggtgtagactgtca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48166707 |
ttaaggtttgacctgactttttggtaagtccgtttaatagtctatttcacgattttttttgacgaaaaatatacaccactaataatggtgtagattgtca |
48166806 |
T |
|
| Q |
216 |
taaataaactaacaatgaaattgacataatttcgttttgtgaacctagaatcatcaatgaagaaacttgtgttggcaatgttggtgatagctatcttagc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48166807 |
taaataaactaacaatgaaattgacataattttgttttgtgaacctagaatcatcaatgaagaaacttgtgttggcaatgttggtgatagctatcttagc |
48166906 |
T |
|
| Q |
316 |
attattgattattgcttttctggtaaaatgtgtatcaaagaagaagcctgttaagaagcacgtccagttgaaacagatagctacttggtctggactttac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48166907 |
attattgattattgcttttctggtaaaatgtgtatcaaagaagaagcctgttaagaagcacgtccagttgaaacagatagctacttggtctggactttac |
48167006 |
T |
|
| Q |
416 |
tggttcacaaaaactgaaattgaaaatgccatgaattttgaaaatgaaaagataaaccttggacgcgggagtgcaggtgaagtgttt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48167007 |
tggttcacaaaaactgaaattgaaaatgccatgaattttgaaaatgaaaagataaaccttggacgcgggagtgcgggtgaagtgttt |
48167093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University