View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_high_6 (Length: 468)
Name: NF17687_high_6
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Original strand, 40092402 - 40092787
Alignment:
| Q |
13 |
tgttgataaataacaaacttacagtgacatttacactgatccctagagaaatgacttcctttattgaaggaatggattcatgagttgcaggaattttaat |
112 |
Q |
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| T |
40092402 |
tgttgataaataacaaacttacagtgacatttacactgatccctagagaaatgacttcctttattgaaggaatggattcatgagttgcaggaattttaat |
40092501 |
T |
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| Q |
113 |
ataaacatttggacatccaaccattttatgaagacattttgctgcattaattgtccctttggtgtcatttgcaagcttgggggagactgcaattgataca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40092502 |
ataaacatttggacatccaaccattttatgaagacattttgctgcctcaattgtccctttggtgtcatttgcaagctcgggggagactgcaattgataca |
40092601 |
T |
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| Q |
213 |
tacccatctataccatcactttcgttgtaaattggctccaagagtttgcaagtatcatgtatgtccttcacaaccaattcccagtaggcactttctgtgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092602 |
tacccatctataccatcactttcgttgtaaattggctccaagagtttgcaagtatcatgtatgtccttcacaaccaattcccagtaggcactttctgtgt |
40092701 |
T |
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| Q |
313 |
cttttcctgcctctaccaactccctgcttaaaccataaatcaaattaatatcatttgtaatttctctaaagtgaacgactcatttt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092702 |
cttttcctgcctctaccaactccctgcttaaaccataaatcaaattaatatcatttgtaatttctctaaagtgaacgactcatttt |
40092787 |
T |
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