View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17687_high_8 (Length: 445)

Name: NF17687_high_8
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17687_high_8
NF17687_high_8
[»] chr3 (13 HSPs)
chr3 (20-431)||(3303982-3304393)
chr3 (35-264)||(3357415-3357644)
chr3 (33-155)||(3721513-3721635)
chr3 (80-285)||(3310715-3310920)
chr3 (83-286)||(3200782-3200985)
chr3 (83-285)||(3322317-3322519)
chr3 (377-437)||(3322617-3322677)
chr3 (67-159)||(3221552-3221644)
chr3 (377-431)||(3200631-3200685)
chr3 (390-431)||(3357776-3357817)
chr3 (377-431)||(3311018-3311072)
chr3 (390-431)||(3221878-3221919)
chr3 (390-431)||(3280660-3280701)
[»] chr1 (2 HSPs)
chr1 (83-159)||(41947316-41947392)
chr1 (67-155)||(49386515-49386603)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 3303982 - 3304393
Alignment:
Q  20 tcccatgcctaccaccacagaaaccaaagtgtgctcattgtctccacccaccaaacgacgaatcaattcatttgttggggactcaaaccccacaacttga 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3303982 tcccatgcctaccaccacagaaaccaacgtgtgctcattgtctccacccaccaaacgacgaatcaattcatttgttggggactcaaatcccacaacttga 3304081  T
Q  120 gtctcttcaatgaaatagggagccattcgagggtcaccaattctaggagctttggaccctcggtagcttcctgattcattatcagactgaaatggaaatc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3304082 gtctcttcaatgaaatagggagccattcgagggtcaccaattctaggagctttggaccctctgtagcttcctgattcattatcagactgaaatggaaatc 3304181  T
Q  220 ttgttcttctttctttgattttaccaagtgttgacttgatgtcttgaatctgagacgcaatctggtggtgtggattcatgattctgagcaaaccaggaaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3304182 ttgttcttctttctttgattttaccaagtgttgacttgatgtcttgaatctgagaagcaatctggtggtgtggattcatgattctgagcaaaccaggaaa 3304281  T
Q  320 catttgtagtgttgctgtgaatatagaatggttcatcctttgcgcctcgcacatgatatactcgtcgattacatcttctatgcgaaaagatacttctctt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3304282 catttgtagtgttgctgtgaatatagaatggttcatcctttgcgcctcgcacatgatatactcgtcgattacatcttctatgcgaaaagatacttctctt 3304381  T
Q  420 acctgcttcacc 431  Q
    || |||||||||    
T  3304382 acttgcttcacc 3304393  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 35 - 264
Target Start/End: Original strand, 3357415 - 3357644
Alignment:
Q  35 cacagaaaccaaagtgtgctcattgtctccacccaccaaacgacgaatcaattcatttgttggggactcaaaccccacaacttgagtctcttcaatgaaa 134  Q
    |||||||||||| ||  | ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3357415 cacagaaaccaacgtccgttcattctctccacccaccaaaagacgaaccaattcatttgttggggactcaaaccctacaacttgagtctcttcaatgaaa 3357514  T
Q  135 tagggagccattcgagggtcaccaattctaggagctttggaccctcggtagcttcctgattcattatcagactgaaatggaaatcttgttcttctttctt 234  Q
    || ||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||| || |  ||||||||||   |||  |||| ||||||||||    
T  3357515 taaggagccattcgagggtcaccaattctaggagctttagtccctctgtagctttctgatccacttccagactgaaactcaaacattgtacttctttctt 3357614  T
Q  235 tgattttaccaagtgttgacttgatgtctt 264  Q
    |||||  | |||||| | ||||||||||||    
T  3357615 tgattccagcaagtgataacttgatgtctt 3357644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 3721635 - 3721513
Alignment:
Q  33 accacagaaaccaaagtgtgctcattgtctccacccaccaaacgacgaatcaattcatttgttggggactcaaaccccacaacttgagtctcttcaatga 132  Q
    |||||||||||| | ||| |||||||| |||| ||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3721635 accacagaaacccatgtgcgctcattggctccccccaccaaaagactaaccaattcatttgttggggactcaaacccaacaacttgagtctcttcaatga 3721536  T
Q  133 aatagggagccattcgagggtca 155  Q
    |||| ||||||||||||||||||    
T  3721535 aataaggagccattcgagggtca 3721513  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 285
Target Start/End: Original strand, 3310715 - 3310920
Alignment:
Q  80 aatcaattcatttgttggggactcaaaccccacaacttgagtctcttcaatgaaataggg-agccattcgagggtcaccaattctaggagctttggaccc 178  Q
    ||||||||||| | |||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||  | | |||||||||||||||| |  ||    
T  3310715 aatcaattcatctcttggagactcaatccccacaacttgagtctcttcaatg-aatagggaagccattcgagtattatcaattctaggagctttagttcc 3310813  T
Q  179 tcggtagcttcctgattcattatcagactgaaatggaaatcttgttcttctttctttgattttaccaagtgttgacttgatgtcttgaatctgagacgca 278  Q
    ||  |||||||| |||||| | |||||||||||  ||| | ||||  |||||||||||||||||||||||| |  ||||||||||| |||||  || |||    
T  3310814 tctatagcttccagattcactttcagactgaaacagaagtgttgtcattctttctttgattttaccaagtgattccttgatgtctttaatctttgaagca 3310913  T
Q  279 atctggt 285  Q
    |||||||    
T  3310914 atctggt 3310920  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 286
Target Start/End: Complemental strand, 3200985 - 3200782
Alignment:
Q  83 caattcatttgttggggactcaaaccccacaacttgagtctcttcaatgaaatagggagccattcgagggtcaccaattctaggagctttggaccctcgg 182  Q
    |||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  ||| ||||||| ||||||||   |||||      
T  3200985 caattcatcttttggggactcaaaccccacaacttgagtctcttgaatgaaataaggagccattcgagtatcatcaattcttggagctttaacccctcta 3200886  T
Q  183 tagcttcctgattcattatcagactgaaatggaaatcttgttcttctttctttgattttaccaagtgttgacttgatgtcttgaatctgagacgcaatct 282  Q
    || ||| || || || | ||||||| || || | | | |   |||||||||||||||| |||||||| | ||||||||||||| |||| ||| |||||||    
T  3200885 taactttctaatccactttcagacttaactgcataccattgacttctttctttgatttcaccaagtgataacttgatgtcttgtatctcagaagcaatct 3200786  T
Q  283 ggtg 286  Q
    ||||    
T  3200785 ggtg 3200782  T

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Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 285
Target Start/End: Original strand, 3322317 - 3322519
Alignment:
Q  83 caattcatttgttggggactcaaaccccacaacttgagtctcttcaatgaaatagggagccattcgagggtcaccaattctaggagctttggaccctcgg 182  Q
    |||||||| ||||||   ||||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||| | | | |||||||    
T  3322317 caattcatctgttggatcctcaaaccccacaacttgagtctcttcagggaaataaagagccattcgagggtcaccaattctaggagttgtagtccctcgg 3322416  T
Q  183 tagcttcctgattcattatcagactgaaatggaaatcttgt-tcttctttctttgattttaccaagtgttgacttgatgtcttgaatctgagacgcaatc 281  Q
    |||||| ||||| || | ||||| |||||   ||| | |||  ||| ||||||||||||||||||||| |  ||||||||||| |||||  || ||||||    
T  3322417 tagctttctgatccactttcagaatgaaacttaaa-catgtcacttttttctttgattttaccaagtgattccttgatgtctttaatctttgaagcaatc 3322515  T
Q  282 tggt 285  Q
    ||||    
T  3322516 tggt 3322519  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 3322617 - 3322677
Alignment:
Q  377 atactcgtcgattacatcttctatgcgaaaagatacttctcttacctgcttcacctatgct 437  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3322617 atactcgtcaactacatcttctatgcgaaaagatacttctcttacctgcttcacccatgct 3322677  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 3221552 - 3221644
Alignment:
Q  67 ccaccaaacgacgaatcaattcatttgttggggactcaaaccccacaacttgagtctcttcaatgaaatagggagccattcgagggtcaccaa 159  Q
    ||||||||| || || |||||||| | |||| |||||||| |||||||||||  |||||||||||||||  | |||||||||| | |||||||    
T  3221552 ccaccaaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaatgaaatgcgaagccattcgaagatcaccaa 3221644  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 3200685 - 3200631
Alignment:
Q  377 atactcgtcgattacatcttctatgcgaaaagatacttctcttacctgcttcacc 431  Q
    |||||| || || ||||||||||||||||||||| ||||||||| ||||||||||    
T  3200685 atactcatcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacc 3200631  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 3357776 - 3357817
Alignment:
Q  390 acatcttctatgcgaaaagatacttctcttacctgcttcacc 431  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  3357776 acatcttctatgcgaaaagatgcttctcttagctgcttcacc 3357817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 3311018 - 3311072
Alignment:
Q  377 atactcgtcgattacatcttctatgcgaaaagatacttctcttacctgcttcacc 431  Q
    ||||||||| | |||||||||||||| || |||||| |||| |||||||||||||    
T  3311018 atactcgtcaactacatcttctatgcaaagagatacatctcgtacctgcttcacc 3311072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 3221878 - 3221919
Alignment:
Q  390 acatcttctatgcgaaaagatacttctcttacctgcttcacc 431  Q
    |||||||||||| |||||||| ||||||||| ||||||||||    
T  3221878 acatcttctatgtgaaaagatgcttctcttagctgcttcacc 3221919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 3280660 - 3280701
Alignment:
Q  390 acatcttctatgcgaaaagatacttctcttacctgcttcacc 431  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||    
T  3280660 acatcttctatacgaaaagatgcttctcttagctgcttcacc 3280701  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 41947316 - 41947392
Alignment:
Q  83 caattcatttgttggggactcaaaccccacaacttgagtctcttcaatgaaatagggagccattcgagggtcaccaa 159  Q
    |||||||| | |||| |||||||| ||||||||||||||||||| ||||||||  | |||||||||| | |||||||    
T  41947316 caattcatctcttggtgactcaaatcccacaacttgagtctctttaatgaaatgcgaagccattcgaagatcaccaa 41947392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 49386515 - 49386603
Alignment:
Q  67 ccaccaaacgacgaatcaattcatttgttggggactcaaaccccacaacttgagtctcttcaatgaaatagggagccattcgagggtca 155  Q
    ||||||||| || || |||||||| | |||| |||||||| |||||||||||  ||||||||||||| |  | |||||||||| |||||    
T  49386515 ccaccaaacaactaaccaattcatctcttggcgactcaaatcccacaacttggttctcttcaatgaattgtgaagccattcgaaggtca 49386603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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