View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_low_1 (Length: 925)
Name: NF17687_low_1
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 822; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 2 - 847
Target Start/End: Original strand, 38784235 - 38785079
Alignment:
| Q |
2 |
tgcaagaagaggcaactccaaattacccttggcagtggcagtgaagattcatctgagaatatggagcagtggatcaaaacagatgcggactgtaagcata |
101 |
Q |
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| T |
38784235 |
tgcaagaagaggcaactccaaattacccttggcagtggcagtgaagattcatctgagaatatggagcagtggatcaaaacagatgcggactgtaagcata |
38784334 |
T |
|
| Q |
102 |
cgtacatacatacatacatctatctcactctgcattggcattatatttcaaatgtgttttagttaactgatgaaagaatttgaaaattcaattgaagtaa |
201 |
Q |
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| T |
38784335 |
cgtacatacatacatacatctatctcactctgcattggcattatatttcaaatgtgttttagttaactgatgaaagaatttgaaaattcaattgaagtaa |
38784434 |
T |
|
| Q |
202 |
ttaagcagcatagcataaacaaaataaaatgaaaactcaagtgcatggctaagattttggaacttgttttaaattgcagacttagtgttggagctctaaa |
301 |
Q |
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| T |
38784435 |
ttaagcagcatagcataaacaaaataaaatgaaaactcaagcgcatggctaagattttggaacttgttttaaattgcagacttagtgttggagctctaaa |
38784534 |
T |
|
| Q |
302 |
aggcaaagggcgaacggaattgggctctctccacgagcatcaaattaatatgaaagatatgatcttcatgggaagactatgcattgccagtaattggttt |
401 |
Q |
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| T |
38784535 |
aggcaaagggcgaacggaattgggctctctccgcgagcatcaaattaatatgaaagatatgatcttcatgggaagactatgcattgccagtaattggttt |
38784634 |
T |
|
| Q |
402 |
tgtttttctttaatgtgtgttaatttcaaacgtagaaccttatggtttgtgtctttagttaattatttgaggttgttgtttaagagtgttaagagtcttt |
501 |
Q |
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| T |
38784635 |
tgtttttctttaatgtgtgttaatttcaaacgtagaaccttatgttttgtgtctttagttaattatttgaggttgttgtttaagagtgttaagagtcttt |
38784734 |
T |
|
| Q |
502 |
ccagatatggtttcacaaggatgaatgaagaaaaagaatttctatgattgtgtgctatttattaagcaattgaatgtaaagaaggaagcaattaaaataa |
601 |
Q |
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| T |
38784735 |
ccagatatggtttcacaaggatgaatgaagaaaaagaatttctatgattgtgtgctatttattaagcaattgaatgtaaagaaggaagcaatt-aaataa |
38784833 |
T |
|
| Q |
602 |
gatttggtttatggcttcacatgatgatatgatatgtagaagcaagtttaatgttcaaaagtaaggtatacatagttgcgacagtcataaaattcagctt |
701 |
Q |
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| T |
38784834 |
gatttggtttatggcttcacatgatgatatgatatgtagaagcaagtttaatgttcaaaagtaaggtatacatagttgcgacagtcataaaattcagctt |
38784933 |
T |
|
| Q |
702 |
cactttcagttctcctatacatgatgcgagagattttacattgcattgcattacatttgatagaagttgagttgaggtctaatggaggtaaactagaggc |
801 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38784934 |
cactttcagttctcctatacatgatgcgagagattttacattgcattgcattacatttgatagaagttgagttgaggtctaatggaagtaaactagaggc |
38785033 |
T |
|
| Q |
802 |
aatccgaattattacataaaggacttcgattgttcctctaaatcat |
847 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38785034 |
aatccgaattattacataaaggacttcgattgttcctctaaatcat |
38785079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 841 - 908
Target Start/End: Original strand, 38785489 - 38785556
Alignment:
| Q |
841 |
aaatcataatagtaggtggaatgttcccgttccaccctgcatttccaggtggaattaaaagagataat |
908 |
Q |
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| T |
38785489 |
aaatcataatagtaggtggaatgttcccgttccactctgcatttccaggtggaattaaaagagataat |
38785556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 572 - 628
Target Start/End: Complemental strand, 52929753 - 52929697
Alignment:
| Q |
572 |
tgaatgtaaagaaggaagcaattaaaataagatttggtttatggcttcacatgatga |
628 |
Q |
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| T |
52929753 |
tgaatgtaaagaaggaagcaattaaaataagattctcttgatggcttcacatgatga |
52929697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 709
Target Start/End: Complemental strand, 52929696 - 52929631
Alignment:
| Q |
645 |
aagtttaatgttcaaaagtaaggtata-catagttgcgacagtcataaaattcagcttcactttca |
709 |
Q |
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|||||||||||| |||||||||||||| |||| ||| ||| || ||||||||||| ||||| |||| |
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| T |
52929696 |
aagtttaatgttgaaaagtaaggtataccataattgtgacggttataaaattcagtttcacattca |
52929631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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