View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_low_10 (Length: 388)
Name: NF17687_low_10
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 5894325 - 5893957
Alignment:
| Q |
1 |
ataatattttttcaacttctacaacattattcataaggttcttatcaatttgaatctttagcaaacacacaattattaagagaaaagcttattgattatt |
100 |
Q |
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| T |
5894325 |
ataatattttttcaacttctacaacattattcataaggttcttatcaatttgaatctttagcaaacacacaattattaagagaaaagcttattgattatt |
5894226 |
T |
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| Q |
101 |
ggacgagctttgcattgtgcctccaatggaatggccataggcaacagagttccacgtccttcagtcatatcaactccttccttgccaatacttttccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5894225 |
ggacgagctttgcattgtgcctccaatggaatggccataggcaacagagttccacgtccttcagtcatatcaactccttccttgccaatccttttccatt |
5894126 |
T |
|
| Q |
201 |
caaagcattgaatcaaagatcccaaagtcaagctcaaagttctcagggctaagcccgacccaggacaagccctcctccccatcccaaaaggaataaaccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894125 |
caaagcattgaatcaaagatcccaaagtcaagctcaaagttctcagggctaagcccgacccaggacaagccctcctccccatcccaaaaggaataaaccc |
5894026 |
T |
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| Q |
301 |
atgtttgtctccttgatgaccatcctcaaacctctcgggcttaaagctcatagggtcagcccacaaatt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5894025 |
atgtttgtctccttgatgaccatcctcaaacctctcgggcttaaagctcatagggtcagcccacaaatt |
5893957 |
T |
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