View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_low_11 (Length: 360)
Name: NF17687_low_11
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 40512854 - 40513181
Alignment:
| Q |
18 |
ctgcccagtccactaactcaggaaaaagcaccttagaaggaaacaccgctttgagccatgaagggtttgtcacatacatatctcccctgcacgcactttt |
117 |
Q |
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| T |
40512854 |
ctgcccagtccactaactcaggaaaaagcagcttagaaggaaacaccgctttgagccatgaagggtttgtcacatacatatctcccctgcacgcactttt |
40512953 |
T |
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| Q |
118 |
tactatgtctttggcacattcatttgctgatcccaatggaatccattgcagactagcctacaatagttagttaatgttgtgaataaatgaattagaataa |
217 |
Q |
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| T |
40512954 |
tactatgtctttggcacattcatttgctgatcccaatggaatccattgcagactagcctacaatagttagttaatgttgtgaataaatgaattagaataa |
40513053 |
T |
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| Q |
218 |
gaacagacacagtagtgtaaactgcattggttgaagtttaaattaaaggaggtgtaatattatgcatggaaccaattgaccaacctcttcttcatatgcc |
317 |
Q |
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| T |
40513054 |
gaacacacacagtagtgtaaactgcattggttgaagtttaaattaaaggaggtgtaatattatgcatggaaccaattgaccaacctcttcttcatatgcc |
40513153 |
T |
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| Q |
318 |
ttcaatgccatatttgttttgataaaac |
345 |
Q |
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| T |
40513154 |
ttcaatgccatatttgttttgataaaac |
40513181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 40526871 - 40526966
Alignment:
| Q |
67 |
tttgagccatgaagggtt----tgtcacatacatatctcccctgcacgcactttttactatgtctttggcacattcatttgctgatcccaatggaa |
158 |
Q |
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| T |
40526871 |
tttgagccatgaagggttggtttgtcacataaatatctcccctgcatgcacctttcactatgtctttggcacattcaactgatgaacccaatggaa |
40526966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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