View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_low_14 (Length: 261)
Name: NF17687_low_14
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 43005945 - 43006178
Alignment:
| Q |
14 |
acagaaacaaaacaaccgaaagcaaagacaaaaagcagccaagaacatcctgctagcaaagcacccaacttcaccacttgtatgtatttcttattatttt |
113 |
Q |
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| T |
43005945 |
acagaaacaaaacaaccgaaagcaaagacaaaaagcagccaagaacatcctgctagcaaagcacccaacttcaccacttgtatgtatttcttattatttt |
43006044 |
T |
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| Q |
114 |
catctacttgcaaccttgtttgaannnnnnngttatgattttcaattcctacctggattggcatctaaaaactatgccccatttagaagattgttgtgta |
213 |
Q |
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| T |
43006045 |
catctacttgcaaccttgtttgaatttttttgttatgattttcaattcctacctggattggcatctaaaaactatgacccatttagaagattgttgtgta |
43006144 |
T |
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| Q |
214 |
tgcatttgatttcactcatggatatgaatatatt |
247 |
Q |
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| T |
43006145 |
tgcatttgatttcactcatggatatgaatatatt |
43006178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 42997678 - 42997823
Alignment:
| Q |
88 |
cacttgtatgtatttcttattattttcatctacttgcaaccttgtttgaannnnnnngtta-tgattttcaattcctacctggattggcatctaaaaact |
186 |
Q |
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|||||||||| || |||||||||||||| || |||||| ||||||||||| || |||||||||||| || ||| |||||||||||| ||||| |
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| T |
42997678 |
cacttgtatgcatctcttattattttcagctgcttgcatccttgtttgaattttttcttttgtgattttcaattactgccttgattggcatctacaaact |
42997777 |
T |
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| Q |
187 |
atgccccatttagaagattgttg----tgtatgcatttgatttcac |
228 |
Q |
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| T |
42997778 |
attctccatttagaagattgttgcgtatatatgcatttgatttcac |
42997823 |
T |
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