View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17687_low_15 (Length: 258)

Name: NF17687_low_15
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17687_low_15
NF17687_low_15
[»] chr2 (1 HSPs)
chr2 (10-241)||(45393879-45394110)
[»] chr4 (3 HSPs)
chr4 (10-151)||(52740460-52740601)
chr4 (124-241)||(52740601-52740721)
chr4 (80-240)||(13539187-13539335)
[»] chr8 (1 HSPs)
chr8 (50-241)||(35782240-35782431)
[»] chr1 (1 HSPs)
chr1 (89-241)||(47836273-47836428)
[»] chr7 (1 HSPs)
chr7 (80-240)||(9668163-9668311)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 45393879 - 45394110
Alignment:
Q  10 ataattctattctagggcatgacactttgcttcatgtcaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgtt 109  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45393879 ataattctattctagggcatgacactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgtt 45393978  T
Q  110 caagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45393979 caagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttc 45394078  T
Q  210 cgtctccaacatcttttgtgcctcctcatatt 241  Q
    ||||||||||||||||||||||||||||||||    
T  45394079 cgtctccaacatcttttgtgcctcctcatatt 45394110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 52740460 - 52740601
Alignment:
Q  10 ataattctattctagggcatgacactttgcttcatgtcaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgtt 109  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  52740460 ataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaatggatatcataaattgtt 52740559  T
Q  110 caagctgatcactactcatatcatcaattgaatcattccacc 151  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  52740560 caagttgatcactactcatatcatcaattgaatcattccacc 52740601  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 52740601 - 52740721
Alignment:
Q  124 ctcatatcatcaattgaatcattccaccagtcacc---cttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccgtctccaaca 220  Q
    ||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52740601 ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca 52740700  T
Q  221 tcttttgtgcctcctcatatt 241  Q
    |||||||||||||| ||||||    
T  52740701 tcttttgtgcctccacatatt 52740721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 13539187 - 13539335
Alignment:
Q  80 ttaactcgtaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaa 179  Q
    ||||||| | ||||||  ||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| || |  |||||            |||    
T  13539187 ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatcgcttttgtt------------caa 13539274  T
Q  180 attttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatat 240  Q
    ||||||||||||  ||||||||||||| |||| ||||||||| |||  |||||||||||||    
T  13539275 attttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatat 13539335  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 241
Target Start/End: Complemental strand, 35782431 - 35782240
Alignment:
Q  50 gttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattcca 149  Q
    ||||||||||| ||||||  ||||||||| |||||||  |||||||| ||||||||| |||||||||||||||| |||| |||||||| || ||||||||    
T  35782431 gttcatcagccttttcaagtagcttcctctttaactcagaaatggactccataaattcttcaagctgatcactattcatctcatcaatagattcattcca 35782332  T
Q  150 ccagtcacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatatt 241  Q
    ||||| |||| | ||  ||||||||| |||||||| ||||||  | |||||||  |||||| | ||||||| |||| |||||||||||||||    
T  35782331 ccagttacccatattccaaatcttagtcaaattttcaacatcagcaagtttctgtttttccatttccaacacctttagtgcctcctcatatt 35782240  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 47836428 - 47836273
Alignment:
Q  89 aaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatctt---agccaaattttg 185  Q
    ||||||||||||||||||||||||||   |||||||||||||  |||||||||||||||||||| ||||| || || |||| |||    |||||| |||     
T  47836428 aaatggacaccataaattgttcaagcacttcactactcatattgtcaattgaatcattccaccaatcacctttcttcaaaaacttggccgccaaaatttc 47836329  T
Q  186 aacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatatt 241  Q
    | |||||  |||||||||||| ||   ||| |||||||||  ||||||||||||||    
T  47836328 agcatctgttagtttcttcttctctaactctaacatctttaatgcctcctcatatt 47836273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 9668163 - 9668311
Alignment:
Q  80 ttaactcgtaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaa 179  Q
    ||||||| | ||||||  ||||||||||||||||||  ||| |||||||||||||||| |||||||||||||| || |  |||||            |||    
T  9668163 ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatcgcttttgtt------------caa 9668250  T
Q  180 attttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatat 240  Q
    ||||||||||||  ||||||||||||| |||| ||||||||| |||  |||||||||||||    
T  9668251 attttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatat 9668311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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