View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17687_low_16 (Length: 246)

Name: NF17687_low_16
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17687_low_16
NF17687_low_16
[»] chr1 (1 HSPs)
chr1 (16-227)||(50234537-50234748)
[»] chr3 (6 HSPs)
chr3 (21-227)||(46954171-46954377)
chr3 (32-217)||(26701678-26701863)
chr3 (157-225)||(39464274-39464342)
chr3 (157-220)||(21789267-21789330)
chr3 (32-73)||(37152345-37152386)
chr3 (21-73)||(21789131-21789183)
[»] chr7 (3 HSPs)
chr7 (106-227)||(1448284-1448405)
chr7 (32-217)||(34361411-34361596)
chr7 (49-107)||(1447049-1447107)
[»] chr4 (1 HSPs)
chr4 (32-217)||(11052738-11052923)
[»] chr6 (1 HSPs)
chr6 (21-128)||(2961128-2961235)
[»] chr5 (1 HSPs)
chr5 (157-225)||(31468850-31468918)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 50234748 - 50234537
Alignment:
Q  16 agctggaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaaga 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234748 agcttgaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaaga 50234649  T
Q  116 tataagggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttct 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234648 tataagggatctccttgttacgcacaatttcactgtccaccattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttct 50234549  T
Q  216 aatgaggagtac 227  Q
    |||||| |||||    
T  50234548 aatgagtagtac 50234537  T

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Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 46954377 - 46954171
Alignment:
Q  21 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataa 120  Q
    ||||| ||||||||||||||||  ||||||||||||||||| |||||||| |||||||| ||||  |||||  ||||||||||||||||||||||||| |    
T  46954377 gaggaattggtttgctactcggtttcgcttctctcaattaatctcattacgggtcaagcttcaaagtatcatgcctatgccgttttaattcaagatatta 46954278  T
Q  121 gggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatga 220  Q
     ||| ||| | ||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||    
T  46954277 aggacctcttagtttcgcacaatttcactgtccagcattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattaggagcttcgtcaaatga 46954178  T
Q  221 ggagtac 227  Q
     ||||||    
T  46954177 tgagtac 46954171  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 26701863 - 26701678
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 131  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||| ||| |||||||||| |||| |||  || |     
T  26701863 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcttcaaagtaccatgcctatgcagttctaattcaagacataaaggacatctta 26701764  T
Q  132 gttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaa 217  Q
        ||||||||||| || ||||  |||||||| | |||||||||||||| |||||||||||||||||||| | |||||| |||||    
T  26701763 tcctcgcacaatttctctatccaacattgcctcagagaaggaaaccaatgtgctgatttcatggcaaaattcgaagcttcctctaa 26701678  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39464274 - 39464342
Alignment:
Q  157 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagt 225  Q
    |||| ||||||||||||||||||||||| |||| | |||| || ||||||||||| || ||||| ||||    
T  39464274 attgtctccgtgaaggaaaccaatgcgcggattacttggctaagttgggagcttcatcaaatgaagagt 39464342  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 21789267 - 21789330
Alignment:
Q  157 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatga 220  Q
    |||| ||||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||    
T  21789267 attgtctccgtgaaggaaaccaatgcgcggattacttggccaagttgggagcttcatcaaatga 21789330  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 37152345 - 37152386
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacagg 73  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  37152345 ttgctactcggactcccttctctccatcaacctcattacagg 37152386  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 21789131 - 21789183
Alignment:
Q  21 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacagg 73  Q
    ||||| |||| |||||||||||||||||||||||| || || || ||||||||    
T  21789131 gaggagttggcttgctactcggactcgcttctctccatcaatcttattacagg 21789183  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 1448284 - 1448405
Alignment:
Q  106 taattcaagatataagggatctccttgttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattggg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  1448284 taattcaagatataagggatctccttgttacgcacaatttcactgtccaccattacctctgtgaaggaaaccaatgcgttgatttcatggcaaaattggg 1448383  T
Q  206 agcttcttctaatgaggagtac 227  Q
    |||||| |||||||| ||||||    
T  1448384 agcttcgtctaatgatgagtac 1448405  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 34361411 - 34361596
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 131  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||| ||| |||| ||||| |||| |||    |||    
T  34361411 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcctcaaagtaccatgcctatgcagttctaatccaagacataaagga----ctt 34361506  T
Q  132 gtta----cgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaa 217  Q
     |||    ||||||||||| || ||||  |||||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  34361507 attatcctcgcacaatttctctatccaacattgcctcagggaaggaaaccaatgtgctgatttcatggcaaaattcggagcttcctctaa 34361596  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 1447049 - 1447107
Alignment:
Q  49 ttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgtttta 107  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  1447049 ttctctcaattaacctcgttacgggtcaagcatcaatatatcattcctatgccgtttta 1447107  T

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Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 11052738 - 11052923
Alignment:
Q  32 ttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataagggatctcctt 131  Q
    ||||||||| ||||| |||||||| || || ||||||||||||||||| ||||  || ||  ||||||||||||||||||||||||||| ||| ||| |     
T  11052738 ttgctactctgactctcttctctccatcaatctcattacaggtcaagcttcaaagtaccatgcctatgccgttttaattcaagatataaaggacctctta 11052837  T
Q  132 gttacgcacaatttcactgtccactattgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaa 217  Q
      | ||||||||||| || ||||  |||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  11052838 tcttcgcacaatttctctatccaacattgcctcagagaaggaaaacaatgcgctgatttcatggcaaaattaggagcttcttctaa 11052923  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 2961128 - 2961235
Alignment:
Q  21 gaggatttggtttgctactcggactcgcttctctcaattaacctcattacaggtcaagcatcaatatatcactcctatgccgttttaattcaagatataa 120  Q
    ||||| |||| |||||||||||||||||||||||| || || || ||||||||   ||| ||||  |||||  ||||||| || ||||| ||||||||||    
T  2961128 gaggagttggcttgctactcggactcgcttctctccatcaatcttattacaggaagagcttcaagctatcatgcctatgctgtcttaatacaagatataa 2961227  T
Q  121 gggatctc 128  Q
     |||||||    
T  2961228 aggatctc 2961235  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 31468850 - 31468918
Alignment:
Q  157 attgcctccgtgaaggaaaccaatgcgctgatttcatggcaaaattgggagcttcttctaatgaggagt 225  Q
    |||| |||||||||||||| ||||| || |||| | ||||||||||||||||||| || ||||| ||||    
T  31468850 attgtctccgtgaaggaaatcaatgtgcggattacttggcaaaattgggagcttcatcgaatgaagagt 31468918  T

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