View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_low_17 (Length: 231)
Name: NF17687_low_17
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 55959755 - 55959551
Alignment:
| Q |
12 |
tattgtctttgctccatacggtgattattggagacaaatgacatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatcttt |
111 |
Q |
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| T |
55959755 |
tattgtctttgctccatacggtgattattggagacaaatga-----ggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatcttt |
55959661 |
T |
|
| Q |
112 |
ttcttccattagagaagatgaggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggta |
211 |
Q |
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| T |
55959660 |
ttcttccattagagaagatgaggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggta |
55959561 |
T |
|
| Q |
212 |
agtacctttg |
221 |
Q |
| |
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|||||||||| |
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| T |
55959560 |
agtacctttg |
55959551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 55956307 - 55956107
Alignment:
| Q |
11 |
atattgtctttgctccatacggtgattattggagacaaatgacatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctt |
110 |
Q |
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| T |
55956307 |
atattgtttatgctccatacggtgattattggagac-----agatgaggaaaatatgtacatcacagcttc-----ttagtgctaaaagggttcattatt |
55956218 |
T |
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| Q |
111 |
tttcttccattagagaagatgaggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggt |
210 |
Q |
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| T |
55956217 |
tttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcactaccacttaatgttactaaaacagctttttctttggt |
55956118 |
T |
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| Q |
211 |
aagtacctttg |
221 |
Q |
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| T |
55956117 |
aagtacctttg |
55956107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 12426637 - 12426499
Alignment:
| Q |
11 |
atattgtctttgctccatacggtgattattggagacaaatgacatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctt |
110 |
Q |
| |
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||||| |||||||| |||| ||||||||||||||||| |||| | ||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
12426637 |
atattatctttgcttcatatggtgattattggagacagatgaga-----aaaatatgtacatcagaacttctta-----gtgctaaaagggtccaatctt |
12426548 |
T |
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| Q |
111 |
tttcttccattagagaagatgaggtagaaaagcttatacaatccattca |
159 |
Q |
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| T |
12426547 |
tttcttccattagagaagatggggtggaaaagatgatacaattcattca |
12426499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 12266221 - 12266321
Alignment:
| Q |
54 |
atgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccattagagaagatgaggtagaaaagcttatacaatc |
153 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||| |
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| T |
12266221 |
atgagaaaaatatgtacatcagaacttctta-----gtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaatt |
12266315 |
T |
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| Q |
154 |
cattca |
159 |
Q |
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|||||| |
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| T |
12266316 |
cattca |
12266321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 7140713 - 7140757
Alignment:
| Q |
89 |
agtgctaaaagggttcaatctttttcttccattagagaagatgag |
133 |
Q |
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| T |
7140713 |
agtgctaaaagggttcaatctttttcttacattagagaagatgag |
7140757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 7152544 - 7152587
Alignment:
| Q |
89 |
agtgctaaaagggttcaatctttttcttccattagagaagatga |
132 |
Q |
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| T |
7152544 |
agtgctaaaagggttcaatctttttcttatattagagaagatga |
7152587 |
T |
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