View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17687_low_2 (Length: 745)
Name: NF17687_low_2
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 331 - 730
Target Start/End: Original strand, 36153703 - 36154102
Alignment:
| Q |
331 |
ctaattaaacgcatcttctaatattgattttgttgtttctacttcaatatccttgtatcttgatgagctagcatacgtacttttagccttaaaaaaggtg |
430 |
Q |
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| T |
36153703 |
ctaattaaacgcatcttctaatattgattttgttatttctacttcaatatccttgtatcttgatgagctagcatacgtacttttagccttaaaaaaggtg |
36153802 |
T |
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| Q |
431 |
ggttctaacacttcatgcagttggattacatgcttgtacatattaatacaccttataggctctaacactacctatcatacacaaatcttacctccctcac |
530 |
Q |
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| T |
36153803 |
ggttctaacacttcatgcagttggattacatgcttgtacatattaatacaccttataggctctaacactacctatcatacacaaatcttacctccctcac |
36153902 |
T |
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| Q |
531 |
catttatcagttacaatactatgatacaccacctttccatgacagacaaagaagatttgttctatcagaaactgcacctttctgacaaaacattgcacct |
630 |
Q |
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| T |
36153903 |
catttatcagttacaatactatgatacaccacctttccatgacagacaaagaagatttgttctatcagaaactgcacctttctgacaaaacattgcacct |
36154002 |
T |
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| Q |
631 |
aattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccctcttcctccacaacaacatcaagcaataataagcattagtat |
730 |
Q |
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| T |
36154003 |
aattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccctcttcctccacagcaacatcaagcaataataagcattagtat |
36154102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 36153389 - 36153635
Alignment:
| Q |
17 |
aattatgagtgctaattttactattgaaacaggttttcaaaatggttgacataatttatggcttgaatgcgattatacgttgatggttgatgctttaaaa |
116 |
Q |
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| T |
36153389 |
aattatgagtgctaattttactattgaaacaggttttcaaaatggttgacataatttatggcttgaatgcgattatacattgatggttgatgctttaaaa |
36153488 |
T |
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| Q |
117 |
aacagtactctgattcctaggaagtttttgaatagatggctgaactgtaacaattttactagccagatgcgattcttgtttactcacatcttcaaagagg |
216 |
Q |
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| T |
36153489 |
aacagtagtctgattccatggaagtttttgaatagatggcagaactgtaacaattttactagccagatgcgattcttgtttactcacatcttcaaagagg |
36153588 |
T |
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| Q |
217 |
gcaacatgtttgccgacaagttatctaattatgatatttctatcgag |
263 |
Q |
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| T |
36153589 |
gcaacatgtttgccgacaagttatctaattatgatatttctatcgag |
36153635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 606 - 714
Target Start/End: Original strand, 36150588 - 36150696
Alignment:
| Q |
606 |
acctttctgacaaaacattgcacctaattaaccaatcaataatttccatccccctaaactataaaagccaaccctttctcccctcttcctccacaacaac |
705 |
Q |
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| T |
36150588 |
acctttctgataaaacattgcacctaattaaccaatcattaatttccatctccctaaactataaaagccaaccctttctcccctcttcctccacaacacc |
36150687 |
T |
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| Q |
706 |
atcaagcaa |
714 |
Q |
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| T |
36150688 |
accaagcaa |
36150696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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