View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17687_low_4 (Length: 533)

Name: NF17687_low_4
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17687_low_4
NF17687_low_4
[»] chr8 (13 HSPs)
chr8 (58-402)||(2711538-2711882)
chr8 (253-515)||(3001758-3002022)
chr8 (58-398)||(2988861-2989201)
chr8 (13-221)||(3002021-3002229)
chr8 (62-400)||(3142422-3142763)
chr8 (58-370)||(9851352-9851667)
chr8 (166-376)||(2916491-2916701)
chr8 (236-402)||(2979945-2980111)
chr8 (152-379)||(2911477-2911704)
chr8 (160-380)||(13790825-13791045)
chr8 (306-380)||(3282983-3283057)
chr8 (160-225)||(3282852-3282917)
chr8 (11-39)||(2711491-2711519)
[»] chr6 (1 HSPs)
chr6 (58-398)||(18355258-18355598)
[»] chr1 (1 HSPs)
chr1 (58-402)||(10755912-10756256)
[»] chr7 (1 HSPs)
chr7 (58-379)||(3919404-3919728)
[»] scaffold0065 (2 HSPs)
scaffold0065 (58-400)||(44973-45317)
scaffold0065 (58-378)||(50163-50486)
[»] chr4 (1 HSPs)
chr4 (174-402)||(8572564-8572792)
[»] chr3 (1 HSPs)
chr3 (174-402)||(28698524-28698752)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 58 - 402
Target Start/End: Original strand, 2711538 - 2711882
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||||| ||||||||||| |||| ||||||||| ||||| ||    
T  2711538 caatctcatgagccattttacggcgaaaagcagctctgcttatggataaggaatgaaatacctgagtcactttgttgttatgagctttatcccttttatg 2711637  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 257  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2711638 tatcatatcttcaataagaaactcatctatcaaatcatcagcaggaagaagcacatctttgagccttctaacccagttttgtacagcatgactttgctct 2711737  T
Q  258 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 357  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||| ||||||||||| |||||    
T  2711738 tgtttgtcttcagcatcaaggaggacagctttgatggattcaactgtgttcttgagtatttccaattcatccataacaccataaatccgtccaagttcac 2711837  T
Q  358 gaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaa 402  Q
    ||||||| |||||||||||||| |||| | ||||| || ||||||    
T  2711838 gaaaggccgcagaagccaacctgcgaacagaaaatatttagcaaa 2711882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 253 - 515
Target Start/End: Complemental strand, 3002022 - 3001758
Alignment:
Q  253 gctcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaa 352  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  3002022 gctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccataacaccattaatccttccaaa 3001923  T
Q  353 ttcacgaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaataaaatcactgttttcattttgacatcccttgtacaaattttaagaaaac 452  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3001922 ttcatcaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaataaaatcactgttttcattttgacatcccttgtacaaattttaagaaaac 3001823  T
Q  453 tc--atgtatgaatcatgataataaaaggtcgaaaatgaagtcacctattaatgaggcgtgtagc 515  Q
    ||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3001822 tcatatgtatgaatcatgataataaaaggttgaaaatgaagtcacctattaatgaggcgtgtagc 3001758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 58 - 398
Target Start/End: Complemental strand, 2989201 - 2988861
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||||||||||||||| |||||||||||| ||||||| |  |||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||    
T  2989201 caatctcatgagccattttacggcgaaaagcagttctgcttggtaagaaggaatgaattacctgtgtcactttgttcttatgagctttatcccgtttgtg 2989102  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 257  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||| |||||| ||||    
T  2989101 tatcatatcttcaataagaaactcatctatcaaatcatctgcaggaagaagcacgtctttgagccttcttacccagacttgtacagcaggacttttctct 2989002  T
Q  258 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 357  Q
    |||||||| ||||||| |||||| |||||| |||||  ||||| |||||| ||||| ||||| ||||||||||| ||||||| ||| |||||||||||||    
T  2989001 tgtttctcctcagcatcaaggagtacagctctgatgacttcaattgtgtttttaagtctttctaattcatccatgacaccataaattcgtccaaattcac 2988902  T
Q  358 gaaaggctgcagaagccaacctacgaaaacaaaattttcag 398  Q
    ||||||||||||||||||||||| ||| | ||||| |||||    
T  2988901 gaaaggctgcagaagccaacctatgaagagaaaatattcag 2988861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 3002229 - 3002021
Alignment:
Q  13 cagacatatctttcacaacatcattaaaacnnnnnnnnnnnnnnncaatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatg 112  Q
    ||||||||||||||||||||||||||||||               |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  3002229 cagacatatctttcacaacatcattaaaacttttttgtattttttcaatctcaagagccattttatggcaaaaagcagctctgcttagagagaaggaatg 3002130  T
Q  113 aaatacctgtgtcactttgttcttatcagctttatctcttttgtgtatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacg 212  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  3002129 aaatacctgtgtcactttgttcttatcagctttatcccttttgtgtatcatatcttcaataagaaactcatctatcaaatcaacagcaggaagaagcacg 3002030  T
Q  213 tctttgagc 221  Q
    |||||||||    
T  3002029 tctttgagc 3002021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 62 - 400
Target Start/End: Original strand, 3142422 - 3142763
Alignment:
Q  62 ctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtgtatc 161  Q
    ||||| |||||||||| ||| |||||||  |||  |  |||| || |||||||  |||||||| ||||||||||||  ||||| ||| | ||| ||| ||    
T  3142422 ctcataagccattttacggctaaaagcaattctattcggagataaagaatgaagcacctgtgttactttgttcttacgagcttcatcccgtttttgtctc 3142521  T
Q  162 atatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgctctt 258  Q
    || ||||| |||  ||||||||||| ||| |||||||||||| |||| || ||   |||||| ||||| | |||| |||||||||||||||||| |||||    
T  3142522 atgtcttcgatagcaaattcatctagcaagtcatcagcaggatgaagtacatcatctttgagtcttcttatccagatttgtacagcatgacttttctctt 3142621  T
Q  259 gtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacg 358  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  3142622 gtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgtttttaagcctttccagttcatccatcacaccataaatccgtccaaattcacg 3142721  T
Q  359 aaaggctgcagaagccaacctacgaaaacaaaattttcagca 400  Q
    |||||| || |||||||||||   |||| ||||||| |||||    
T  3142722 aaaggccgctgaagccaacctgacaaaagaaaatttccagca 3142763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 58 - 370
Target Start/End: Original strand, 9851352 - 9851667
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||||  ||||||||| ||||||||| |  | || || |||| |||||||||| ||||| ||| ||||||||||||| || || |||  ||||||     
T  9851352 caatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttactttgttcttatgagtttcatccattttgtt 9851451  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgc--- 254  Q
      ||||||||||||||| ||||||||||| ||||||||| |||||| ||||||| |||||||||||||| ||||| ||| | ||||||||| ||||        
T  9851452 cctcatatcttcaataacaaattcatctagcaaatcatctgcaggatgaagcacatctttgagccttcttacccaatttcgaacagcatgattttgtgct 9851551  T
Q  255 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 354  Q
    ||||||||||||||||||| |||||||||| || | || |||||||| |||||||||||| |||||||||||| ||| |||||||| |||||||||||||    
T  9851552 tcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagcttttccaattcattcataacaccattgatccgtccaaatt 9851651  T
Q  355 cacgaaaggctgcaga 370  Q
    |||| ||||| |||||    
T  9851652 cacgcaaggcagcaga 9851667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 166 - 376
Target Start/End: Original strand, 2916491 - 2916701
Alignment:
Q  166 cttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttgtttctc 265  Q
    ||||||||| ||||||||||| ||| |||||||||||| ||||||| || ||||| ||||||| ||||||||||||||||||  |||| |||||||||||    
T  2916491 cttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttctaatccagttttgtacagcatggttttgttcttgtttctc 2916590  T
Q  266 ttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggct 365  Q
     ||||||| ||||||||||||||||||||||||||| || | |  |||||| || |  |||| | | |||||||  ||||||| |||||||||| ||||     
T  2916591 ctcagcatcaaggagcacagctttgatggattcaaccgtctcccgaagcctatcgacctcatacttaacaccatatatccgtcgaaattcacgacaggcc 2916690  T
Q  366 gcagaagccaa 376  Q
     ||||||||||    
T  2916691 tcagaagccaa 2916701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 236 - 402
Target Start/End: Complemental strand, 2980111 - 2979945
Alignment:
Q  236 ttgtacagcatgactttgctcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcaca 335  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||| |||||| |||||  ||||| |||||| ||||| ||||| |||||||||||||||    
T  2980111 ttgtacagcatgacttttctcttgtttctcctcagcatcaaggagtacagctctgatgacttcaattgtgtttttaagtctttctaattcatccatcaca 2980012  T
Q  336 ccattaatccgtccaaattcacgaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaa 402  Q
      |||||||||||||||||| || |||||  |||||||||||||||| ||| ||||| |||||||||    
T  2980011 ttattaatccgtccaaattcgcgtaaggcaacagaagccaacctacgtaaagaaaatattcagcaaa 2979945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 152 - 379
Target Start/End: Original strand, 2911477 - 2911704
Alignment:
Q  152 tttgtgtatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactt 251  Q
    ||||||| ||| ||||||||||| ||||||||||| ||| |  ||||||  |   ||||| |||||||| ||||||| |||||||| |||||||||  ||    
T  2911477 tttgtgtctcaaatcttcaataacaaattcatctagcaagttgtcagcaaaattcagcacatctttgagtcttctaatccagttttttacagcatggttt 2911576  T
Q  252 tgctcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaa 351  Q
    || |||||||| || ||||||| |||||| |||  | |||| || |||||||| ||||||||||||||||| |||| ||| |||||||  || | |||||    
T  2911577 tgttcttgtttgtcctcagcatcaaggagtacatttctgatagactcaactgtattcttaagcctttccaactcattcataacaccatagattcctccaa 2911676  T
Q  352 attcacgaaaggctgcagaagccaacct 379  Q
    | ||||||||||| ||||| ||||||||    
T  2911677 actcacgaaaggccgcagatgccaacct 2911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 160 - 380
Target Start/End: Complemental strand, 13791045 - 13790825
Alignment:
Q  160 tcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttg 259  Q
    ||||| ||||||||| ||||||||||| ||| ||||| ||| || ||||||| ||| |||||||||| | ||| || |||||| ||  | |||| || ||    
T  13791045 tcataccttcaataataaattcatctagcaagtcatctgcaagatgaagcacatctgtgagccttcttatccaattctgtacaacaaaattttgttcctg 13790946  T
Q  260 tttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacga 359  Q
    ||| || |  || | |||||||||| || | | | ||||||| | ||||||||| |||||||| |||||||| ||||||  ||   |||||| |||||||    
T  13790945 tttatcctgggcgtcaaggagcacaactcttacgcattcaacagagttcttaagtctttccaactcatccataacaccaaaaacttgtccaagttcacga 13790846  T
Q  360 aaggctgcagaagccaaccta 380  Q
    |||||||| |||| |||||||    
T  13790845 aaggctgccgaagtcaaccta 13790825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 3282983 - 3283057
Alignment:
Q  306 ttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggctgcagaagccaaccta 380  Q
    |||||||| ||||| || |||||||| ||||||  ||| ||||||  ||||||||||||||||||||||||||||    
T  3282983 ttcttaagtctttctaactcatccataacaccaaaaattcgtccatgttcacgaaaggctgcagaagccaaccta 3283057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 3282852 - 3282917
Alignment:
Q  160 tcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttc 225  Q
    ||||| |||||||||  |||||||||| ||| ||||| ||| || ||||||| |||||||||||||    
T  3282852 tcataccttcaataatgaattcatctagcaagtcatctgcaagatgaagcacatctttgagccttc 3282917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 2711491 - 2711519
Alignment:
Q  11 cacagacatatctttcacaacatcattaa 39  Q
    |||||||||||||||||||||||||||||    
T  2711491 cacagacatatctttcacaacatcattaa 2711519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 58 - 398
Target Start/End: Complemental strand, 18355598 - 18355258
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  18355598 caatctcatgagccattttacggcgaaaagcagttctgcttggtgagaaggaatgaaatacctgtttcactttgttcttatgagctttatcccttttgtg 18355499  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 257  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  18355498 tatcatatcttcaataaaaaattcatctatcaaatcatctgcaggaagaagcaggtcgttgagccttctaacccagagttgtacagcatgactttgctct 18355399  T
Q  258 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 357  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||| ||||||| |||||    
T  18355398 tgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtcttcttaagcctttccagttcatccatgacaccataaattcgtccaatttcac 18355299  T
Q  358 gaaaggctgcagaagccaacctacgaaaacaaaattttcag 398  Q
    ||||||||||||||||||||||| ||| | ||||| |||||    
T  18355298 gaaaggctgcagaagccaacctatgaagagaaaatattcag 18355258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 58 - 402
Target Start/End: Original strand, 10755912 - 10756256
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||  ||||||||||| | | |||| ||||| |||||| |||||| ||||||| ||||| ||| ||||||||||||| ||||| ||| |||||| |    
T  10755912 caatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatgaagtacctttgttactttgttcttatgagcttcatcccttttgcg 10756011  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctct 257  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||| |||||||||||||||||  | |||||| ||||    
T  10756012 tatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctct 10756111  T
Q  258 tgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcac 357  Q
    ||||| |  ||||||| ||||||||||||| |||||||||||||||| ||| |||| ||||| ||||||||  |||||  ||||||||||||||||||||    
T  10756112 tgtttgttctcagcatcaaggagcacagctctgatggattcaactgtcttcgtaaggctttctaattcatctttcacattattaatccgtccaaattcac 10756211  T
Q  358 gaaaggctgcagaagccaacctacgaaaacaaaattttcagcaaa 402  Q
    | |||||  |||||||||||||| ||||| |||| | ||||||||    
T  10756212 gtaaggcaacagaagccaacctatgaaaagaaaaatgtcagcaaa 10756256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 58 - 379
Target Start/End: Original strand, 3919404 - 3919728
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||||||||||||||| |||||||||||  |||| || |||| |||||||||| ||||| ||| |||||||||||||||||||  ||  |||||||    
T  3919404 caatctcatgagccattttacggcgaaaagcaaatctgtttggagataaggaatgaagtacctttgttactttgttcttatcagcttcctcaattttgtg 3919503  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgc 254  Q
    | ||||||| | ||||| ||||||||| | ||| |||||||||||| ||||||| ||   |||||||||||| | ||||||||| ||| ||||| ||||     
T  3919504 tctcatatcgtgaataacaaattcatcgagcaagtcatcagcaggatgaagcacatcatctttgagccttcttatccagttttgcacaccatgattttgt 3919603  T
Q  255 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 354  Q
    | ||||||||| || |||| ||||||||||||| ||||||||| ||||||  |||||||||||||||| | || ||| ||||||| |||||| |||||||    
T  3919604 tgttgtttctcctcggcatcaaggagcacagctctgatggattgaactgtactcttaagcctttccaactgatgcataacaccataaatccgcccaaatt 3919703  T
Q  355 cacgaaaggctgcagaagccaacct 379  Q
    ||||||| |||||||||||||||||    
T  3919704 cacgaaacgctgcagaagccaacct 3919728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 58 - 400
Target Start/End: Complemental strand, 45317 - 44973
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||||||||||||||| ||| |||||||  |||  || |||| |||  ||||| |||||||||||||||||||||   ||||| ||| | ||||||    
T  45317 caatctcatgagccattttacggctaaaagcaattctatttggagataagcgatgaagtacctgtgtcactttgttcttgcgagcttcatcccgtttgtg 45218  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgc 254  Q
    | |||| |||||||||  ||||||||||| |||||||||||||||| ||||||| ||   |||||| ||||| | ||||||||| ||| ||||||||||     
T  45217 tctcatgtcttcaatagaaaattcatctagcaaatcatcagcaggatgaagcacatcatctttgagtcttcttatccagttttgcacaccatgactttgt 45118  T
Q  255 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 354  Q
    | ||||||||| ||||||| ||||||||||||| ||| ||||||||| || ||||||||||||||||| |||| ||| ||||||| |||||||||||| |    
T  45117 tgttgtttctcctcagcatcaaggagcacagctctgacggattcaacagtattcttaagcctttccaactcatgcataacaccatgaatccgtccaaact 45018  T
Q  355 cacgaaaggctgcagaagccaacctacgaaaacaaaattttcagca 400  Q
    || |||| ||||||||||||||||| | |||| ||||| |||||||    
T  45017 catgaaaagctgcagaagccaacctgc-aaaagaaaatattcagca 44973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 58 - 378
Target Start/End: Complemental strand, 50486 - 50163
Alignment:
Q  58 caatctcatgagccattttatggcgaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcactttgttcttatcagctttatctcttttgtg 157  Q
    |||||||||||||||||||| |||||||||||  |||| || |||| || ||||||| ||||||| ||| ||| ||||||  ||||| ||||| ||||||    
T  50486 caatctcatgagccattttaaggcgaaaagcaattctgtttggagataaagaatgaagtacctgtctcagttttttcttacgagcttcatctcgtttgtg 50387  T
Q  158 tatcatatcttcaataagaaattcatctatcaaatcatcagcaggaagaagcacgtc---tttgagccttctaacccagttttgtacagcatgactttgc 254  Q
    | ||| ||||||||||||||||| ||||| ||| |||||||||||| |||| || ||   |||||| ||||| | |||| |||||||||||| |||||||    
T  50386 tctcaaatcttcaataagaaatttatctagcaagtcatcagcaggatgaagtacatcatctttgagtcttcttatccagatttgtacagcattactttgc 50287  T
Q  255 tcttgtttctcttcagcataaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaatt 354  Q
    |||||||||||||||||||  ||||||||||||  || ||||||||| || ||||||||||||| ||| |  | ||| ||||||| ||||||||||||||    
T  50286 tcttgtttctcttcagcatcgaggagcacagctcagacggattcaacagtattcttaagccttttcaacttgtgcataacaccatgaatccgtccaaatt 50187  T
Q  355 cacgaaaggctgcagaagccaacc 378  Q
    ||||||| || |||||||||||||    
T  50186 cacgaaaagcagcagaagccaacc 50163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 174 - 402
Target Start/End: Complemental strand, 8572792 - 8572564
Alignment:
Q  174 agaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttgtttctcttcagcat 273  Q
    ||||||||||||||||||||||| |||| || |||||| |||||||||||| |||||||||||||||||  | |||||| ||||||||| |  |||||||    
T  8572792 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 8572693  T
Q  274 aaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggctgcagaagc 373  Q
     ||||||| ||||| |||||||||||||||| ||| |||| ||||| ||||||||  |||||  |||||||| |||||||||||| |||||  |||||||    
T  8572692 caaggagcgcagctctgatggattcaactgtcttcgtaagactttctaattcatctttcacattattaatccttccaaattcacgtaaggcaacagaagc 8572593  T
Q  374 caacctacgaaaacaaaattttcagcaaa 402  Q
    ||||||| ||||| |||| | ||||||||    
T  8572592 caacctatgaaaagaaaaatgtcagcaaa 8572564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 174 - 402
Target Start/End: Complemental strand, 28698752 - 28698524
Alignment:
Q  174 agaaattcatctatcaaatcatcagcaggaagaagcacgtctttgagccttctaacccagttttgtacagcatgactttgctcttgtttctcttcagcat 273  Q
    ||||||||||||||||||||||| |||| || |||||| |||||||||||| |||||||||||||||||  | |||||| ||||||||| |  |||||||    
T  28698752 agaaattcatctatcaaatcatctgcagcaacaagcacatctttgagccttgtaacccagttttgtacacaaagacttttctcttgtttgttctcagcat 28698653  T
Q  274 aaaggagcacagctttgatggattcaactgtgttcttaagcctttccaattcatccatcacaccattaatccgtccaaattcacgaaaggctgcagaagc 373  Q
     ||||||| ||||| |||||||||||||||| ||| |||| ||||| ||||||||  |||||  |||||||| |||||||||||| |||||  |||||||    
T  28698652 caaggagcgcagctctgatggattcaactgtcttcgtaagactttctaattcatctttcacattattaatccttccaaattcacgtaaggcaacagaagc 28698553  T
Q  374 caacctacgaaaacaaaattttcagcaaa 402  Q
    ||||||| ||||| |||| | ||||||||    
T  28698552 caacctatgaaaagaaaaatgtcagcaaa 28698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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