View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17687_low_7 (Length: 467)
Name: NF17687_low_7
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 38644813 - 38644434
Alignment:
| Q |
18 |
aaagatagtaaaccaagtaaaggaatcattggttaatgtaatgaactagggaaatatttcaatttcaaaatttcatcatttgatatatccctgcacnnnn |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38644813 |
aaagatagtaaaccaagtaaaagaatcattggttaatgtaatgaactagggaaatatttcaatttcaaaatttcatcatttgatatatccctgcactttt |
38644714 |
T |
|
| Q |
118 |
nnng-atgcctagccacgtgttctactatggactccccatattcactagaaaaccatgtgaacttaggaactttatatcctcaagaaagttctgtttgta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38644713 |
tttttatgcctagccacgtgttctactatggactccccatattcactagaaaactatgtgaacttaggaactttatatc-tcaagaaagttctgtttgta |
38644615 |
T |
|
| Q |
217 |
gagcaacagtagggaatggagacacaaaataaggtttgttcatatatcccacattgaaatcatatctatttaaagccctttcaatcacattttttacttg |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38644614 |
gagcaacattagggaatggagacacaaaataaggtttgttcatatatcccacattgaaatcatatctatttaaagccctttcaatcacattttttacttg |
38644515 |
T |
|
| Q |
317 |
gtgcctcctaatgttttgtctacttggtgaacaacattgtctacattttggttttggttgattatggttacattttaaaga |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38644514 |
gtgcctcctaatgttttgtctacttggtgaacaacattgtctacattttggttttggttgattatggttacattttaaaga |
38644434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 264 - 440
Target Start/End: Original strand, 38661121 - 38661295
Alignment:
| Q |
264 |
cccacattgaaatcatatctatttaaagccctttcaatcacattttttacttggtgcctcctaatgttttgtctacttggtgaacaacattgtctacatt |
363 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||| ||| |||||||||||||||||| || | ||||||||||||||| || |||||||||||| |||| |
|
|
| T |
38661121 |
cccacattgaaatcatgtctattttaagccatttcgatcgcattttttacttggtgcc-cccagtgttttgtctacttgctggacaacattgtct-catt |
38661218 |
T |
|
| Q |
364 |
ttggttttggttgattatggttacattttaaagatctattcttgaaactcgaatagtttgccgattctaattttcct |
440 |
Q |
| |
|
||| ||||||||||||||| | |||||| || |||||||||||||| |||||||||| | ||||| ||||||||| |
|
|
| T |
38661219 |
ttgattttggttgattatgttcacatttcaagtatctattcttgaaattcgaatagttggtggattcaaattttcct |
38661295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 38659941 - 38660069
Alignment:
| Q |
122 |
atgcctagccacgtgttctactatggactccccatattcactagaaaaccatgtgaacttaggaactttatatcctcaagaaagttctgtttgtagagca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| | |||||| ||||||||||||||||| | || |||| || |
|
|
| T |
38659941 |
atgcctagccacgtgttctactatggactgggg-tattcactagaaaactaagtgaactttgaaactttgtatcctcaagaaagttcggcttatagaaca |
38660039 |
T |
|
| Q |
222 |
acagtagggaatggagacacaaaataaggt |
251 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
38660040 |
acattagggaatggagacacaaaataaggt |
38660069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 401
Target Start/End: Original strand, 27800662 - 27800825
Alignment:
| Q |
240 |
acaaaataaggtttgttcatatatcccacattgaaatcatatctatttaaagccctttcaatcacattttttacttggtgcctcct-aatgttttgtcta |
338 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| | | |||| ||| |||| | || ||| |||||||||| || ||||||||||||| |
|
|
| T |
27800662 |
acaaaataagttttgttcacatatcccacattgaaatcatgtttgtttatagctttttcggccctatctttgacttggtgcccccccaatgttttgtcta |
27800761 |
T |
|
| Q |
339 |
c-ttggtgaacaacattgtctacattttggttttggttgattatggttacattttaaagatcta |
401 |
Q |
| |
|
|||||| |||| |||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
27800762 |
aattggtggacaatgttgtctacattttgatttcatttgattatggttacattttaaagatcta |
27800825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 38658428 - 38658466
Alignment:
| Q |
70 |
aatatttcaatttcaaaatttcatcatttgatatatccc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38658428 |
aatatttcaatttcaaaatttcatcatttgatatatccc |
38658466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University