View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17687_low_9 (Length: 399)
Name: NF17687_low_9
Description: NF17687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17687_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 32784953 - 32785223
Alignment:
| Q |
7 |
ttggaagcaatcaggttacagctcaattggttttcaaagtaggtacagctatcagttttctagtgtctatttggcatagcaaggaggtcatcagaagtaa |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32784953 |
ttggaagcaatcaggttaaagctcaattggttttcaaagtaggtacagctatcagttttctagtgtctatttgtcacagcaaggaggtcatcagaagtaa |
32785052 |
T |
|
| Q |
107 |
ttggaaatttggttaagcaaggaataatttcatggagaagcataaagatgttcaactttttgtctaaacgttctgaacttactcaaacagcataaagatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32785053 |
ttggaaatttggttaagcaaggaataatttcatggagaagcataaagatgttcaactttttgtctaaacgttccgaacttactcaaacagcataaagatt |
32785152 |
T |
|
| Q |
207 |
ctaaacttttttcatgtaaaagttacttaatgatggaaggagtaacattaactgaatgaaaacaaatgtat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32785153 |
ctaaacttttttcatgtaaaagttacttaatgatggaaggaataacattaactgaatgaaaacaaatgtat |
32785223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 274 - 390
Target Start/End: Original strand, 32785245 - 32785361
Alignment:
| Q |
274 |
gtatcattattactttcttctatgtaaatgaaaggcattgctgcagtatcagatattctttgcttgtgcaatatttcactgcaaagcatttcaataatat |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32785245 |
gtatcattattactttcttctatgtaaatgaaaggcattgctgcagtatcagagattctttgcttgtgcaatatttcactgcaaagcatttcaataatat |
32785344 |
T |
|
| Q |
374 |
atacagattagtattat |
390 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32785345 |
atacagattagtattat |
32785361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 7918733 - 7918794
Alignment:
| Q |
182 |
aacttactcaaacagcataaagattctaaacttttttcatgtaaaagttacttaatgatgga |
243 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||| |
|
|
| T |
7918733 |
aacttactcaaacagcataaagattctcaacttttgtcatgtaatagttacttaaagatgga |
7918794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 7918490 - 7918523
Alignment:
| Q |
114 |
tttggttaagcaaggaataatttcatggagaagc |
147 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
7918490 |
tttggttaagcaaagaataatttcatggagaagc |
7918523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University