View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_high_17 (Length: 304)
Name: NF17688_high_17
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 28817249 - 28817528
Alignment:
| Q |
7 |
tagattattctgaaagtatgttcctatcaagaacttttgccatatcttcaacggctttcttgtgatctccttcaaccaaagcagtgtatctcgcagtttc |
106 |
Q |
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| T |
28817249 |
tagattcttctgaaagtatgttcctatcaagaacttttgccatatcttcaacggctttcttgtgatctccttcaaccaaagcagtgtatctcgcagtttc |
28817348 |
T |
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| Q |
107 |
cggcattttcattctccaatagtaagttaatgctgcaggaacagcaccaaacattaacacaattctccaaacgaaatcaccttctggttgagtagataga |
206 |
Q |
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| T |
28817349 |
cggcattttcattctccaatagtaagttaatgctgcaggaacagcaccaaacattaacacaattctccaaacgaaatcaccttctggttgagtggataga |
28817448 |
T |
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| Q |
207 |
acagcatcagtttcaaaatcaggagctggaaagtacaataagaatagtttcgagacaaacatggctacgcctccagcaac |
286 |
Q |
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| T |
28817449 |
acagcatcagtttcaaaatcaggagctggaaagtacaataagaatagtttcgagacaaacatggctacgcctccagcaac |
28817528 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 37315589 - 37315675
Alignment:
| Q |
108 |
ggcattttcattctccaatagtaagttaatgctgcaggaacagcaccaaacattaacacaattctccaaacgaaatcaccttctggt |
194 |
Q |
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||||||||||| | ||||||||||||||| | |||||||||||||||||||| | | ||||||||||| ||||| |||||||| |
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| T |
37315589 |
ggcattttcatacgccaatagtaagttaaaccagcaggaacagcaccaaacatgagaatgattctccaaacataatcagcttctggt |
37315675 |
T |
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