View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_high_2 (Length: 613)
Name: NF17688_high_2
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 47269075 - 47268693
Alignment:
| Q |
12 |
gcagagacaagagaagggcatctgtttgagcagtatttttctcaatttagtccgtcaaatatcttaataactaatcatggtcaacttcaaacatgatata |
111 |
Q |
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| T |
47269075 |
gcagagacaagagaagggcatctgtttgagcagtatttttctcaatttagtccgtcaaatatcttaataactaatcatggtcaacttcaaacatgatata |
47268976 |
T |
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| Q |
112 |
tggtg---tctatgtacatgttttctaggaaatgcatttgcattttctcagctagcagctgaaatgagatggtttagatttgtttgtatcgatattcatg |
208 |
Q |
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| T |
47268975 |
tggtggtgtctatgtacatgttttctaggaaatgcatttgcattttctcagctagcagctgaaatgagatggtttagatttgtttgtatcgatattcatg |
47268876 |
T |
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| Q |
209 |
acttgtatgtgtgtagtagaattgaattggttgaatttagttgctatttgctagaatttgatgaatcagatgatcgggtaagcaacttctttctcttttg |
308 |
Q |
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| T |
47268875 |
acttgtatgtgtgtagtagaattgaattggttgaatttagttgctatttgctagaatttgatgaatcagatgatcgggtaagtaacttctttctcttttg |
47268776 |
T |
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| Q |
309 |
gattacctaaaaagtaaacatggattgcactcgcaaattttaacctaaatagattagtagtttgagtgttatcaattttttca |
391 |
Q |
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| T |
47268775 |
gattacctaaaaagtaaacatggattgcactcgcaaattttaacctaaatagattagtagtttgagtgttatcaattttttca |
47268693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 413 - 595
Target Start/End: Complemental strand, 47268651 - 47268470
Alignment:
| Q |
413 |
tttagatcaagtttaattgccttgtaaatttcatatacgcacattgttaagcacacttacagttggtttggtaggtgagagtttgcagcgagagagatat |
512 |
Q |
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| T |
47268651 |
tttagatcaagtttaattgccttgtaaatttcatatacgcacattgttaagcacacttacagttcgtttggtaggcgagagtttgctgcgagagagatat |
47268552 |
T |
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| Q |
513 |
tgaagagagaaaaagcaaagagatggcttatttctatcgtttggagcatcagtaaaatgtcacccactttttgagtctcctct |
595 |
Q |
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| T |
47268551 |
tgaagagagaaaaagcaaagagatggcttatttctatcgtttggagcat-agtaaaatgccacccactttttgagtctcctct |
47268470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 571
Target Start/End: Complemental strand, 42596856 - 42596814
Alignment:
| Q |
529 |
aaagagatggcttatttctatcgtttggagcatcagtaaaatg |
571 |
Q |
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| T |
42596856 |
aaagagatgacttatttctatcgtttggagcatcagtgaaatg |
42596814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 16871077 - 16871123
Alignment:
| Q |
478 |
gtttggtaggtgagagtttgcagcgagagagatattgaagagagaaaaa |
526 |
Q |
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| T |
16871077 |
gtttggtaggtgagagtttgatgcgaga--gatattgaagagagaaaaa |
16871123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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