View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_high_24 (Length: 231)
Name: NF17688_high_24
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 50620069 - 50619871
Alignment:
| Q |
18 |
caatcttttactataccaaacgctgaagttgatgatttggtggatgatatatgcaaaaagacaccaaattctgatctatgcagttcaatcctacattcca |
117 |
Q |
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| T |
50620069 |
caatcttttactataccaaacgctgaagttgatgatttggtggatgatatatgcaaaaagacaccaaattctgatctatgcagttcaatcctacattcca |
50619970 |
T |
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| Q |
118 |
gtcctcaagccaaaacaactgatgcaaagggtatagccaccataatggttagtgacattctacaaaatgccactaacacattaaattatattcaagttc |
216 |
Q |
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| T |
50619969 |
gtcctcaagccaaaacaactgatgccaagggtatagccaccataatggttagtgacattctacaaaatgccactaacacattaaactatattcaagttc |
50619871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 36 - 216
Target Start/End: Complemental strand, 50625350 - 50625170
Alignment:
| Q |
36 |
aacgctgaagttgatgatttggtggatgatatatgcaaaaagacaccaaattctgatctatgcagttcaatcctacattccagtcctcaagccaaaacaa |
135 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
50625350 |
aacgttgaagttgatgatttggtggatgatatatgcaaaaagacaccaaattctgatctatgcagttcaatcctacattccaatcctcaagccaacacaa |
50625251 |
T |
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| Q |
136 |
ctgatgcaaagggtatagccaccataatggttagtgacattctacaaaatgccactaacacattaaattatattcaagttc |
216 |
Q |
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| T |
50625250 |
ctgatgcaaagggtatagccgcaataatggtcaatgacattctagaaaatgccaccaacacattgaattatattcaagttc |
50625170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 50622830 - 50622715
Alignment:
| Q |
36 |
aacgctgaagttgatgatttggtggatgatatatgcaaaaagacaccaa------attctgatctatgcagttcaatcctacattccagtcctcaagcca |
129 |
Q |
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| T |
50622830 |
aacgctgaagttgatgatttggtggatgacatatgc-aaaagaccccaaactttgactttgacttatgcagttcagtcctacattccaatcgtcaagcca |
50622732 |
T |
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| Q |
130 |
aaacaactgatgcaaag |
146 |
Q |
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| T |
50622731 |
acacaactaatgcaaag |
50622715 |
T |
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