View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17688_high_5 (Length: 453)

Name: NF17688_high_5
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17688_high_5
NF17688_high_5
[»] chr8 (20 HSPs)
chr8 (18-401)||(42126129-42126512)
chr8 (270-401)||(13884488-13884619)
chr8 (271-400)||(13884706-13884835)
chr8 (263-401)||(11867899-11868036)
chr8 (270-401)||(29714541-29714672)
chr8 (271-401)||(42126601-42126731)
chr8 (296-401)||(2554067-2554172)
chr8 (317-399)||(14996678-14996761)
chr8 (271-401)||(29714759-29714889)
chr8 (340-390)||(2554002-2554052)
chr8 (337-390)||(14996608-14996661)
chr8 (337-390)||(29714691-29714744)
chr8 (310-401)||(15862541-15862632)
chr8 (270-368)||(43416262-43416360)
chr8 (312-397)||(26745959-26746044)
chr8 (337-390)||(42126532-42126585)
chr8 (317-397)||(26745309-26745389)
chr8 (337-387)||(13884638-13884688)
chr8 (410-439)||(14996600-14996629)
chr8 (369-401)||(15862422-15862454)
[»] chr7 (16 HSPs)
chr7 (269-401)||(28715640-28715772)
chr7 (266-401)||(28715859-28715994)
chr7 (268-383)||(30862215-30862330)
chr7 (270-401)||(41985909-41986040)
chr7 (272-401)||(6474281-6474411)
chr7 (266-401)||(6474498-6474632)
chr7 (312-401)||(30862437-30862526)
chr7 (271-401)||(47373462-47373594)
chr7 (296-401)||(47373679-47373784)
chr7 (270-343)||(41986183-41986256)
chr7 (337-387)||(41986058-41986108)
chr7 (337-390)||(47373612-47373665)
chr7 (317-397)||(6271188-6271268)
chr7 (312-397)||(38408121-38408206)
chr7 (317-397)||(38407478-38407558)
chr7 (324-397)||(6270272-6270345)
[»] chr1 (16 HSPs)
chr1 (269-401)||(10824586-10824718)
chr1 (267-401)||(37189565-37189699)
chr1 (296-401)||(18844484-18844589)
chr1 (270-439)||(22683140-22683311)
chr1 (272-401)||(15825738-15825865)
chr1 (271-396)||(37189368-37189492)
chr1 (269-389)||(18844677-18844798)
chr1 (269-401)||(19056368-19056500)
chr1 (296-399)||(10824393-10824496)
chr1 (271-401)||(19056150-19056280)
chr1 (314-401)||(22683358-22683445)
chr1 (337-389)||(22683290-22683342)
chr1 (337-390)||(10824514-10824567)
chr1 (337-390)||(19056295-19056348)
chr1 (337-387)||(18844608-18844658)
chr1 (337-383)||(37189495-37189541)
[»] chr4 (15 HSPs)
chr4 (265-401)||(39161282-39161418)
chr4 (268-401)||(55173470-55173603)
chr4 (269-401)||(39161504-39161636)
chr4 (269-401)||(47096798-47096928)
chr4 (270-389)||(50509357-50509476)
chr4 (264-390)||(55173327-55173454)
chr4 (153-270)||(40971173-40971289)
chr4 (269-401)||(47097017-47097146)
chr4 (312-401)||(37996106-37996195)
chr4 (59-136)||(40970955-40971032)
chr4 (92-163)||(40971033-40971104)
chr4 (337-390)||(47096947-47097001)
chr4 (164-270)||(27256836-27256941)
chr4 (337-389)||(39161436-39161488)
chr4 (317-397)||(9738164-9738243)
[»] chr2 (21 HSPs)
chr2 (270-437)||(2916377-2916545)
chr2 (271-439)||(16973064-16973234)
chr2 (273-401)||(44594455-44594583)
chr2 (269-389)||(44594246-44594367)
chr2 (270-401)||(40987656-40987787)
chr2 (296-401)||(38982774-38982879)
chr2 (270-401)||(16973281-16973412)
chr2 (266-389)||(38982552-38982675)
chr2 (269-389)||(11533673-11533794)
chr2 (296-401)||(24125876-24125975)
chr2 (296-401)||(2916594-2916699)
chr2 (269-401)||(13559519-13559650)
chr2 (277-401)||(40987863-40987987)
chr2 (296-401)||(24126146-24126245)
chr2 (337-390)||(16973213-16973266)
chr2 (337-390)||(44594383-44594436)
chr2 (324-401)||(13559357-13559434)
chr2 (337-390)||(38982702-38982755)
chr2 (337-390)||(2916526-2916579)
chr2 (337-390)||(24125804-24125857)
chr2 (271-338)||(24125670-24125737)
[»] scaffold0060 (1 HSPs)
scaffold0060 (270-401)||(22922-23053)
[»] chr6 (16 HSPs)
chr6 (267-397)||(24798843-24798973)
chr6 (271-397)||(2216799-2216925)
chr6 (270-401)||(24798624-24798755)
chr6 (276-439)||(11643754-11643919)
chr6 (267-390)||(11643977-11644099)
chr6 (269-401)||(18494732-18494862)
chr6 (269-365)||(24690353-24690449)
chr6 (271-401)||(18494949-18495079)
chr6 (273-357)||(24690607-24690691)
chr6 (337-390)||(11643898-11643951)
chr6 (153-220)||(14863175-14863243)
chr6 (336-388)||(24798770-24798822)
chr6 (82-140)||(14863020-14863080)
chr6 (337-390)||(24690504-24690557)
chr6 (317-397)||(9954853-9954933)
chr6 (312-397)||(9955590-9955675)
[»] chr3 (15 HSPs)
chr3 (266-439)||(51663245-51663420)
chr3 (270-401)||(51663467-51663598)
chr3 (265-401)||(40244619-40244756)
chr3 (296-401)||(46003465-46003570)
chr3 (312-401)||(20537967-20538056)
chr3 (272-401)||(20538151-20538280)
chr3 (269-401)||(46003246-46003378)
chr3 (25-128)||(3738471-3738573)
chr3 (270-401)||(40364040-40364171)
chr3 (337-390)||(46003393-46003446)
chr3 (274-382)||(40364194-40364301)
chr3 (337-383)||(20538076-20538122)
chr3 (270-333)||(40244873-40244936)
chr3 (337-390)||(51663399-51663452)
chr3 (75-124)||(347105-347153)
[»] scaffold0781 (1 HSPs)
scaffold0781 (271-397)||(5256-5382)
[»] chr5 (5 HSPs)
chr5 (266-401)||(21249357-21249492)
chr5 (153-220)||(38935551-38935619)
chr5 (337-387)||(21249511-21249561)
chr5 (355-401)||(21249579-21249625)
chr5 (74-140)||(38935715-38935783)
[»] scaffold0098 (2 HSPs)
scaffold0098 (66-160)||(46142-46236)
scaffold0098 (153-270)||(46307-46423)
[»] scaffold0034 (1 HSPs)
scaffold0034 (323-387)||(108047-108111)


Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 42126129 - 42126512
Alignment:
Q  18 caattttcttatgtgtcatcccaccaaaattcctccgttcaaactaatctttcatgctaatgtcatgtggctttctctcattttcttttcatcactcttt 117  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||||    
T  42126129 caattttcttatgtgtcatctcaccaaaactcctccgttcaaactaatctttaatgctaatgtcacgtgaatttctctcattttcttttcatcactcttt 42126228  T
Q  118 cataactctttaattataaaatagctgatttaattgtctcaactatgaagggttttgtgcgctaattttggttttctctaaaatatcatttgcttttcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42126229 cataactctttaattataaaatagctgatttaattgtctcaactatgaagggttttgtgcgctaattttggttttctctaaaatatcatttgcttttcat 42126328  T
Q  218 aaagtttataaaatggaagagttttggtatttagtgtgacataaataattttaggcttattcaatcacccggttactgaacttaattaattatctcaatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||| ||||||||    
T  42126329 aaagttcataaaatggaagagttttggtatttagtgtgacataaataattttaggcttattcaatcacccggtcccttaacttaattaattgtctcaatt 42126428  T
Q  318 tggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    || ||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42126429 tgattctctaactataatttgtatcaatttggccccctatgttttgcttcgctactagttttagtcctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 13884488 - 13884619
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    |||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  13884488 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgt 13884587  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    |||||||||||||| |||||||||||||||||    
T  13884588 tactagttttagtcttttctggtagtttctct 13884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 13884835 - 13884706
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    ||||||||||||||||||||  || ||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  371 actagttttagtcctttctggtagtttctc 400  Q
    ||| ||||||||||||| || |||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 263 - 401
Target Start/End: Complemental strand, 11868036 - 11867899
Alignment:
Q  263 taattttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgtttt 362  Q
    |||||||||||||||||||||||| |||  || ||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  11868036 taattttaggcttattcaatcacctggtc-cttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgtttt 11867938  T
Q  363 gcttcgttactagttttagtcctttctggtagtttctct 401  Q
    | || || ||||||||||||||||| || ||||||||||    
T  11867937 gatttgtcactagttttagtcctttatgttagtttctct 11867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 29714541 - 29714672
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    |||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| ||    
T  29714541 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgt 29714640  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    |||||| |||| || |||||| ||||||||||    
T  29714641 tactagctttaatcatttctgttagtttctct 29714672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 271 - 401
Target Start/End: Complemental strand, 42126731 - 42126601
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    ||||||||||||||||||||  || ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  371 actagttttagtcctttctggtagtttctct 401  Q
    |||| |||||||| |||||| ||||||||||    
T  42126631 actaattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 2554172 - 2554067
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| ||| |||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||    
T  2554172 aacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttctgttagt 2554073  T
Q  396 ttctct 401  Q
    ||||||    
T  2554072 ttctct 2554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  317 ttggttccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctggtagtttct 399  Q
    ||||| |||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 401
Target Start/End: Complemental strand, 29714889 - 29714759
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    ||||||||  |||||| |||  || ||||||||| ||| | | |||||||| || ||||||||||||||| ||||||||||| |||||||||||||| ||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  371 actagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||| ||| ||  |||||||||    
T  29714789 actagttttagtcatttatgtcagtttctct 29714759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  340 accaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 14996608 - 14996661
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttctg 14996661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 15862632 - 15862541
Alignment:
Q  310 tctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    |||||||||| | ||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   ||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctct 15862541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 43416262 - 43416360
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||||||||||||||  ||||  || ||||||||| ||| ||| |||||  | |||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416262 aggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 26746044 - 26745959
Alignment:
Q  312 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  |||||||||| ||||||    
T  26746044 tcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttctgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 42126532 - 42126585
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||| ||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagtcttttctg 42126585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 26745309 - 26745389
Alignment:
Q  317 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  26745309 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 13884638 - 13884688
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 387  Q
    |||||||||||| || | ||||||||||| |||| ||||||||||||||||    
T  13884638 tgtaccaatttgatctcttatgttttgctccgttcctagttttagtccttt 13884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 439
Target Start/End: Original strand, 14996600 - 14996629
Alignment:
Q  410 ttaacttatgtactaatttggtcccctatg 439  Q
    ||||||||||||||||||||||||||||||    
T  14996600 ttaacttatgtactaatttggtcccctatg 14996629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 15862422 - 15862454
Alignment:
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||||||| |||||||||||||    
T  15862422 ttactagttttagtcctttatggtagtttctct 15862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 269 - 401
Target Start/End: Original strand, 28715640 - 28715772
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||| |||||||||||||||||  || ||||||||||||| | | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  28715640 taggtttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcg 28715739  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    |||||||||||||||||||||||||||||||||    
T  28715740 ttactagttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 266 - 401
Target Start/End: Complemental strand, 28715994 - 28715859
Alignment:
Q  266 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 365  Q
    ||||||||||||||||| |||||||  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  28715994 ttttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgct 28715895  T
Q  366 tcgttactagttttagtcctttctggtagtttctct 401  Q
      || ||||||||||||| |||||| ||||||||||    
T  28715894 cagtcactagttttagtcatttctgttagtttctct 28715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 30862215 - 30862330
Alignment:
Q  268 ttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttc 367  Q
    |||||||||||||||||  ||||  || ||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||     
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgcttt 30862314  T
Q  368 gttactagttttagtc 383  Q
    ||||||||||||||||    
T  30862315 gttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 41985909 - 41986040
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    |||||||||||||||||| ||  || ||||||||| ||| |||||||||| | |||||||||||||||||  |||||||||||| |||||||||||| ||    
T  41985909 aggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgt 41986008  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    ||||| ||||||||||||| | ||||||||||    
T  41986009 tactaattttagtcctttccgttagtttctct 41986040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 401
Target Start/End: Original strand, 6474281 - 6474411
Alignment:
Q  272 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatg-ttttgcttcgtt 370  Q
    ||||||||||| ||| | |  || ||||||||| ||| |||||||||| | ||||||||||||||| || ||||||||||||||||| |||||||| |||    
T  6474281 gcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtt 6474380  T
Q  371 actagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||| |||||| ||||||||||    
T  6474381 actagttttagtcttttctgttagtttctct 6474411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 401
Target Start/End: Complemental strand, 6474632 - 6474498
Alignment:
Q  266 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 365  Q
    ||||||||||||||||||||||| |  || ||||||||| ||| ||| ||||||||  ||||||||||| ||||||| ||||| |||| |||| ||||||    
T  6474632 ttttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgct 6474534  T
Q  366 tcgttactagttttagtcctttctggtagtttctct 401  Q
      |||||||||||||||||||| || ||||||||||    
T  6474533 ctgttactagttttagtcctttatgttagtttctct 6474498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 401
Target Start/End: Complemental strand, 30862526 - 30862437
Alignment:
Q  312 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |||||||||||  ||||||| |||||||| |||||| ||||||||||    
T  30862526 tcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttactaattttagtcttttctgttagtttctct 30862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 271 - 401
Target Start/End: Original strand, 47373462 - 47373594
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactata--atttgtaccaatttggtcccctatgttttgcttcg 368  Q
    ||||||||||||||| || |  || ||||||||| ||| |||||||||| | | |||| ||||  ||||||||||||||||||||||||||||||||  |    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    || |||||||||||| ||| || ||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctct 47373594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 47373784 - 47373679
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| |||||| || ||||    
T  47373784 aacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatcctttatgttagt 47373685  T
Q  396 ttctct 401  Q
    ||||||    
T  47373684 ttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 41986256 - 41986183
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtacca 343  Q
    |||||||||||||||||||||| || |||||||||  || |||||||||| | |||||||||||||||||||||    
T  41986256 aggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 387  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 47373612 - 47373665
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagtcgtttctg 47373665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 6271268 - 6271188
Alignment:
Q  317 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    ||||| |||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  |||||||||| ||||||    
T  6271268 ttggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttctgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 38408206 - 38408121
Alignment:
Q  312 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    |||| ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  38408206 tcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 38407478 - 38407558
Alignment:
Q  317 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    ||||| |||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  38407478 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 6270272 - 6270345
Alignment:
Q  324 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||  ||| |||||| ||||||    
T  6270272 cctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagtttcggtcttttctgttagttt 6270345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 10824718 - 10824586
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  10824718 taggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 10824619  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||||||||| |||||||||||    
T  10824618 ttactagttttagtcctttctagtagtttctct 10824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 267 - 401
Target Start/End: Complemental strand, 37189699 - 37189565
Alignment:
Q  267 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgctt 366  Q
    ||||| |||||||||||||| |||  || ||||||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  37189699 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgctt 37189600  T
Q  367 cgttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||||| |||||||||||||||||    
T  37189599 cgttactagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 296 - 401
Target Start/End: Original strand, 18844484 - 18844589
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18844484 aacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcatttctggtagt 18844583  T
Q  396 ttctct 401  Q
    ||||||    
T  18844584 ttctct 18844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 270 - 439
Target Start/End: Original strand, 22683140 - 22683311
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    ||||||||||||||||||| |   | ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||    
T  22683140 aggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgt 22683239  T
Q  370 tactagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 439  Q
    ||||||||||||||||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  22683240 tactagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 15825865 - 15825738
Alignment:
Q  272 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 371  Q
    |||||||||||||||||||  || ||||||||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15825865 gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggt--cctaactataatttgtaccaatttggtcccctatgttttgctttgtta 15825768  T
Q  372 ctagttttagtcctttctggtagtttctct 401  Q
     ||||||||||||||| |  ||||||||||    
T  15825767 ttagttttagtcctttttattagtttctct 15825738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 271 - 396
Target Start/End: Original strand, 37189368 - 37189492
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    ||||||||||||||||||||  || ||||||||| ||| ||||||||||||  | ||||||||||||||||||||||||||| |||||||||||| ||||    
T  37189368 ggcttattcaatcacccggtc-cttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  371 actagttttagtcctttctggtagtt 396  Q
    |||||||||||||||||||| |||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 269 - 389
Target Start/End: Complemental strand, 18844798 - 18844677
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgcttc 367  Q
    |||||||||||||||||||| |  || ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |    
T  18844798 taggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctcc 18844699  T
Q  368 gttactagttttagtcctttct 389  Q
    ||||||||||||||| ||||||    
T  18844698 gttactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 19056500 - 19056368
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||||||||||||||| |||||  || ||||||||| ||| | | |||||||| ||||||||||||| ||||||||||||||  |||||||||||||| |    
T  19056500 taggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttg 19056401  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||| ||||||  |||||||||    
T  19056400 ttactagttttagtcatttctgtcagtttctct 19056368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 10824393 - 10824496
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| |||||  ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||    
T  10824393 aacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcctttctgttagt 10824492  T
Q  396 ttct 399  Q
    ||||    
T  10824493 ttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 401
Target Start/End: Original strand, 19056150 - 19056280
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    |||||||||||||||| | |  || ||||||||| ||| | | |||||||| |||||| ||||||||||| |||||||||||||||| |||||||| |||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  371 actagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||| |||||| ||||||||||    
T  19056250 actagttttagtcttttctgttagtttctct 19056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 22683445 - 22683358
Alignment:
Q  314 aatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    |||||||| |||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctct 22683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 389  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 19056348 - 19056295
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttctg 19056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 387  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||||||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 37189541 - 37189495
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 383  Q
    |||||||||| |||||||| ||||||||| |||| ||||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagtc 37189495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 265 - 401
Target Start/End: Original strand, 39161282 - 39161418
Alignment:
Q  265 attttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgc 364  Q
    |||||||||||||||||||||||| |   | ||||||||| | | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39161282 attttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgc 39161381  T
Q  365 ttcgttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||||||||||||||  |||||||||    
T  39161382 ttcgttactagttttagtcctttctgaaagtttctct 39161418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 55173603 - 55173470
Alignment:
Q  268 ttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttc 367  Q
    |||||||||||||||||||||||  || ||||||||| ||| |||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||     
T  55173603 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgcttt 55173504  T
Q  368 gttactagttttagtcctttctggtagtttctct 401  Q
    |||||| ||||||||| ||| || ||||||||||    
T  55173503 gttacttgttttagtcttttttgctagtttctct 55173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 39161636 - 39161504
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    ||||||||||||| || |||||| || ||||||||| ||| | | |||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||    
T  39161636 taggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccg 39161537  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||| |||||||||||||||||| ||||||||||    
T  39161536 ttattagttttagtcctttctgttagtttctct 39161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 269 - 401
Target Start/End: Original strand, 47096798 - 47096928
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||||||||||||||||| | |  || ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||    
T  47096798 taggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaatttgc-cccctatgttttgcttcg 47096895  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||||| ||||||||||||| || | ||||||||    
T  47096896 ttacttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 389
Target Start/End: Complemental strand, 50509476 - 50509357
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    ||||||||||||||| | | |  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  50509476 aggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 50509377  T
Q  370 tactagttttagtcctttct 389  Q
    ||||| |||||||| |||||    
T  50509376 tactaattttagtcttttct 50509357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 390
Target Start/End: Original strand, 55173327 - 55173454
Alignment:
Q  264 aattttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggt-cccctatgtttt 362  Q
    |||||| ||||||||| |||| |||||| || ||||||||| ||| ||| |||||||| ||||||||||||||||||  |||||||| ||||||| ||||    
T  55173327 aatttttggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatatttt 55173426  T
Q  363 gcttcgttactagttttagtcctttctg 390  Q
    ||| ||||||||||||||||||||||||    
T  55173427 gctccgttactagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 40971173 - 40971289
Alignment:
Q  153 gtctcaactatgaagggttttgtgcgctaattttggttttctct-aaaatatcatttgcttttcataaagtttataaaatggaagagttttggtatttag 251  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||  |||||| ||| |||| ||| ||||| ||||||||    
T  40971173 gtctcaactatgaagggttttgtgcgctaacttttgttttctctaaaaatatcatttggttttc--aaagttcatacaatgaaagggttttagtatttag 40971270  T
Q  252 tgtgacataaataatttta 270  Q
    ||||||||||||| |||||    
T  40971271 tgtgacataaatattttta 40971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 47097146 - 47097017
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||||||||||||||| ||| |  || ||||||||| ||| ||||||||| || | |||||||||||||||||||||||| |   |||||||||||  ||    
T  47097146 taggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccg 47097050  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||| ||| || ||||||||||    
T  47097049 ttactagttttagtcatttttgttagtttctct 47097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 37996106 - 37996195
Alignment:
Q  312 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||| |  ||||||||||    
T  37996106 tcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttattagttttagtcttttttattagtttctct 37996195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 40970955 - 40971032
Alignment:
Q  59 aactaatctttcatgctaatgtcatgtggctttctctcattttcttttcatcactctttcataactctttaattataa 136  Q
    |||||| ||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  40970955 aactaaactttcatactaatgccatgtggctttctctccttttcttttaatcactctttcataactcttcaattataa 40971032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 40971033 - 40971104
Alignment:
Q  92 ctctcattttcttttcatcactctttcataactctttaattataaaatagctgatttaattgtctcaactat 163  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||| |||||||    
T  40971033 ctctccttttcttttaatcactctttcataactcttcaattataaaatggttgatttaattgtcacaactat 40971104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  337 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagtcctttctg 390  Q
    |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 27256836 - 27256941
Alignment:
Q  164 gaagggttttgtgcgctaattttggttttctct-aaaatatcatttgcttttcataaagtttataaaatggaagagttttggtatttagtgtgacataaa 262  Q
    ||||| ||||||||||||| ||| ||||||||| ||||||||||||| |||||  |||||| ||| |||| ||| ||| |  ||| ||||||||||||||    
T  27256836 gaaggattttgtgcgctaacttttgttttctctaaaaatatcatttggttttc--aaagttcatacaatgaaagggttataatatctagtgtgacataaa 27256933  T
Q  263 taatttta 270  Q
    || |||||    
T  27256934 tattttta 27256941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttct 389  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 9738164 - 9738243
Alignment:
Q  317 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    ||||| |||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  ||||||| || ||||||    
T  9738164 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac-agtttcggtcctttttgttagttt 9738243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 270 - 437
Target Start/End: Original strand, 2916377 - 2916545
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    ||||||||||||||||||| |  || ||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||    
T  2916377 aggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 2916476  T
Q  370 tactagttttagtcctttctggtagtttctct-nnnnnnnnttaacttatgtactaatttggtccccta 437  Q
    ||||||||||| ||||||||| ||||||||||         ||||||||||||| ||||||||||||||    
T  2916477 tactagttttaatcctttctgttagtttctctcaaaaaacgttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 16973064 - 16973234
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    ||||||||||||||||||||  || ||||||||| ||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  371 actagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 439  Q
    |||||||||| | ||||||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  16973164 actagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 273 - 401
Target Start/End: Complemental strand, 44594583 - 44594455
Alignment:
Q  273 cttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 372  Q
    ||||||||||||||||||   | || |||||| ||| |||||||||||| |||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  373 tagttttagtcctttctggtagtttctct 401  Q
    ||||||||||| |||||||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctct 44594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 44594246 - 44594367
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgcttc 367  Q
    ||||||||||||||||||||||  || ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||      
T  44594246 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctct 44594345  T
Q  368 gttactagttttagtcctttct 389  Q
    ||||||||||||||| ||||||    
T  44594346 gttactagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 40987656 - 40987787
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    ||||||||| ||||| |||||  || ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || ||    
T  40987656 aggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgt 40987755  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    |||||||||||||| ||| || ||||||||||    
T  40987756 tactagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 38982879 - 38982774
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| ||| |||||||||||| || ||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||| |||||||||||    
T  38982879 aacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttctggtagt 38982780  T
Q  396 ttctct 401  Q
    ||||||    
T  38982779 ttctct 38982774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 16973412 - 16973281
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    ||||||||||||||||  |||  || ||||||||| ||| |||||||||||| |||||||||||||||||  ||||||||||| |||||||||||| | |    
T  16973412 aggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccat 16973313  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    |||||||||||||| ||||||  |||||||||    
T  16973312 tactagttttagtcatttctgtcagtttctct 16973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 389
Target Start/End: Original strand, 38982552 - 38982675
Alignment:
Q  266 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 365  Q
    |||| |||||| ||||||||||| |   | ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||   |||||||||||    
T  38982552 tttttggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgct 38982651  T
Q  366 tcgttactagttttagtcctttct 389  Q
    ||||| ||||||||||||||||||    
T  38982652 tcgttgctagttttagtcctttct 38982675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 389
Target Start/End: Complemental strand, 11533794 - 11533673
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggt-cccctatgttttgcttc 367  Q
    |||||||||||||||| | |||  || ||||||| | ||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||     
T  11533794 taggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgcttt 11533695  T
Q  368 gttactagttttagtcctttct 389  Q
     ||||||||||||||| |||||    
T  11533694 attactagttttagtcatttct 11533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| ||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 2916699 - 2916594
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| ||| |||||||||||| |||||||||| ||||||||||| ||| ||| |||| |||||||  |||||||||||| |||||||||| ||||    
T  2916699 aacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttactagttttggtcctttctgttagt 2916600  T
Q  396 ttctct 401  Q
    ||||||    
T  2916599 ttctct 2916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 401
Target Start/End: Complemental strand, 13559650 - 13559519
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||||||||||||||| |||||  || ||||||||| ||| | ||||||||||||||||||||||||||||| ||| |||||||| | || ||||||  |    
T  13559650 taggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctg 13559552  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||||||| ||||||| ||| || ||||||||||    
T  13559551 ttactagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 401
Target Start/End: Complemental strand, 40987987 - 40987863
Alignment:
Q  277 ttcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 376  Q
    ||||||||||||||  || ||||||||||||| |||||||||| | | ||||||||||||||||  ||||||||||||||| |||||||   || ||| |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  377 tttagtcctttctggtagtttctct 401  Q
    ||||||| |||||| ||||||||||    
T  40987887 tttagtcatttctgttagtttctct 40987863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||      |||||||||||||||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 13559357 - 13559434
Alignment:
Q  324 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||| |||||| ||||||||||    
T  13559357 cctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||||| ||||||||||| |||| || ||||||||||||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 2916526 - 2916579
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||| ||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagtcttttctg 2916579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 24125857 - 24125804
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||| ||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagtcatttctg 24125804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttg 338  Q
    |||||||||| ||| |||||  || ||||||||| ||| |||||||||| | ||||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 23053 - 22922
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    |||||||||||||||||||||  || ||||||||| ||| ||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||    
T  23053 aggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgt 22954  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||||||||| ||||||||||    
T  22953 tactagttttagtcctttctgttagtttctct 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 24798973 - 24798843
Alignment:
Q  267 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgctt 366  Q
    |||||||||||||||||||||| |  || || |||||| ||| ||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||    
T  24798973 tttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgctt 24798874  T
Q  367 cgttactagttttagtcctttctggtagttt 397  Q
    ||||||||||||||||||||||| |||||||    
T  24798873 cgttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 2216925 - 2216799
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    |||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2216826  T
Q  371 actagttttagtcctttctggtagttt 397  Q
    | ||||||||||| ||| || ||||||    
T  2216825 attagttttagtcatttatgttagttt 2216799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 24798624 - 24798755
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    ||||||||||||| |  ||||  || |||||||||  || | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24798624 aggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgt 24798723  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    |||||||||||||| |||||| ||||||||||    
T  24798724 tactagttttagtcatttctgttagtttctct 24798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 439
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  276 attcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 375  Q
    |||||||||||||||  || || |||||| ||| |||||||||| | |||||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  376 ttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 439  Q
    |||||||||| |||| ||||||||||          ||||||||||||| ||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 390
Target Start/End: Complemental strand, 11644099 - 11643977
Alignment:
Q  267 tttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggt-tccctaactataatttgtaccaatttggtcccctatgttttgct 365  Q
    ||||||||||||||||||||||||  || ||||||||| ||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||||||| ||    
T  11644099 tttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-ct 11644002  T
Q  366 tcgttactagttttagtcctttctg 390  Q
    | |||||||||||||||| ||||||    
T  11644001 ttgttactagttttagtcttttctg 11643977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 401
Target Start/End: Original strand, 18494732 - 18494862
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||||||||||||||||  |||  || ||||| ||| ||| |||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |    
T  18494732 taggcttattcaatcacatggtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttg 18494829  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||||||| || ||||||||||    
T  18494830 ttactagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 24690353 - 24690449
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 365  Q
    ||||||||||||||||||||||  || ||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  24690353 taggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 401
Target Start/End: Complemental strand, 18495079 - 18494949
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    |||||||||||||| |  ||  || ||||||||| ||||| | |||||| | || ||||||||||||||| |||||||||||||||| ||||| | ||||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgtt 18494980  T
Q  371 actagttttagtcctttctggtagtttctct 401  Q
    | |||||||||| ||||||| ||||||||||    
T  18494979 attagttttagttctttctgttagtttctct 18494949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  273 cttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctat 357  Q
    |||||||||||||||| |  || ||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 11643898 - 11643951
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttctg 11643951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 14863175 - 14863243
Alignment:
Q  153 gtctcaactatgaagggttttgtgcgctaattttggttttctct-aaaatatcatttgcttttcataaa 220  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||| ||||||||||    
T  14863175 gtcttaactatgaagggttttgtgtgctaattttggttttatctaaaaatgtcatttggttttcataaa 14863243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  336 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttc 388  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 14863020 - 14863080
Alignment:
Q  82 atgtggctttctctcattttcttttcatcactctttcataactcttt--aattataaaata 140  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||||  ||||||||||||    
T  14863020 atgtggctttctctcttattcttttaatcactctttcataactcttttgaattataaaata 14863080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||||||||||||| |||||||||||||   ||| ||||||||||||||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 9954853 - 9954933
Alignment:
Q  317 ttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    ||||| |||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||  ||||||| || ||||||    
T  9954853 ttggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtcctttatgttagttt 9954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 9955675 - 9955590
Alignment:
Q  312 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagttt 397  Q
    |||| ||||| |||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  |||||||||| ||||||    
T  9955675 tcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttctgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 266 - 439
Target Start/End: Original strand, 51663245 - 51663420
Alignment:
Q  266 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 365  Q
    |||| |||||||| |||||||||||  || ||||||||| ||| | | ||| |||| | |||||||||||||||| |||||| |||||||||||||||||    
T  51663245 tttttggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgct 51663344  T
Q  366 tcgttactagttttagtcctttctggtagtttctct--nnnnnnnnttaacttatgtactaatttggtcccctatg 439  Q
    |||||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||    
T  51663345 tcgttactagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 51663598 - 51663467
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    ||||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  51663598 aggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgt 51663499  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    |||||||||||||| |||||| ||||||||||    
T  51663498 tactagttttagtcatttctgttagtttctct 51663467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 265 - 401
Target Start/End: Original strand, 40244619 - 40244756
Alignment:
Q  265 attttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttgg-tcccctatgttttg 363  Q
    |||| ||||||||||||||| ||| |  || ||||||||| ||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  40244619 atttcaggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttg 40244718  T
Q  364 cttcgttactagttttagtcctttctggtagtttctct 401  Q
    ||| |||||||||||||||| |||||| ||||||||||    
T  40244719 ctttgttactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 46003570 - 46003465
Alignment:
Q  296 aacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagt 395  Q
    ||||||||| ||| |||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||    
T  46003570 aacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattactagttttagtcctttctggtagt 46003471  T
Q  396 ttctct 401  Q
    ||||||    
T  46003470 ttctct 46003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 20537967 - 20538056
Alignment:
Q  312 tcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  20537967 tcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattactagttttagtcctttctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 272 - 401
Target Start/End: Complemental strand, 20538280 - 20538151
Alignment:
Q  272 gcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 371  Q
    |||||||||||||||||||   | || |||||| ||| |||||||||| | |||||||||||||||||| |||||| ||   |||||||||||| |||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtta 20538181  T
Q  372 ctagttttagtcctttctggtagtttctct 401  Q
    |||||||||||| |||||| ||||||||||    
T  20538180 ctagttttagtcatttctgttagtttctct 20538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 401
Target Start/End: Original strand, 46003246 - 46003378
Alignment:
Q  269 taggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcg 368  Q
    |||| |||||||||||||||||   | ||||||||| ||| | | |||||||| |||||||||||||||||| ||||||||||| ||||||| || |  |    
T  46003246 taggtttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctg 46003345  T
Q  369 ttactagttttagtcctttctggtagtttctct 401  Q
    |||| |||||||||||||| || ||||||||||    
T  46003346 ttacaagttttagtcctttttgttagtttctct 46003378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 3738573 - 3738471
Alignment:
Q  25 cttatgtgtcatcccaccaaaattcctccgttcaaactaatctttcatgctaatgtcatgtggctttctctcattttcttttcatcactctttcataact 124  Q
    ||||||||||| | |||||||| ||  || ||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  3738573 cttatgtgtcacctcaccaaaactctccctttctaaccaatttttcatgctaatgccatgtggctttctctc-ttttcttttaatcactctttcataact 3738475  T
Q  125 cttt 128  Q
    ||||    
T  3738474 cttt 3738471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 40364040 - 40364171
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 369  Q
    |||||||||| |||||||  |  || ||||||||| ||||||| |||||||| || ||| ||||||||||| ||||||| |||||| | ||||||| |||    
T  40364040 aggcttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgt 40364139  T
Q  370 tactagttttagtcctttctggtagtttctct 401  Q
    || ||||||||||| ||| || ||||||||||    
T  40364140 tattagttttagtcatttttgttagtttctct 40364171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 274 - 382
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  274 ttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 373  Q
    ||||||||||||  |||  || ||||||||| ||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttact 40364203  T
Q  374 agttttagt 382  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtc 383  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 40244936 - 40244873
Alignment:
Q  270 aggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactata 333  Q
    |||||||||||||||||| ||  || ||||||||| ||| |||||||||||| |||||||||||    
T  40244936 aggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 51663399 - 51663452
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtcctttctg 390  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||| ||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagtcatttctg 51663452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 347105 - 347153
Alignment:
Q  75 taatgtcatgtggctttctctcattttcttttcatcactctttcataact 124  Q
    ||||| |||||||||||||||| |||| |||| |||||||||||||||||    
T  347105 taatgccatgtggctttctctc-ttttattttaatcactctttcataact 347153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 271 - 397
Target Start/End: Complemental strand, 5382 - 5256
Alignment:
Q  271 ggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 370  Q
    |||||||||||||| |||||  || ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 5283  T
Q  371 actagttttagtcctttctggtagttt 397  Q
    | ||||||||||| ||| || ||||||    
T  5282 attagttttagtcatttatgttagttt 5256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 21249357 - 21249492
Alignment:
Q  266 ttttaggcttattcaatcacccggttactgaacttaattaattatctcaatttggttccctaactataatttgtaccaatttggtcccctatgttttgct 365  Q
    |||| |||||||||||||||| |||  || | | ||||| ||| |||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||    
T  21249357 ttttcggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgct 21249456  T
Q  366 tcgttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||||||| ||||||||| ||||||||||    
T  21249457 tcgttactagttttaatcctttctgttagtttctct 21249492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 38935619 - 38935551
Alignment:
Q  153 gtctcaactatgaagggttttgtgcgctaattttggttttctctaaa-atatcatttgcttttcataaa 220  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||    
T  38935619 gtctcaactatgaagggttttgtgtgctaattttggttttctctaaacatatcatttggttttcataaa 38935551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  337 tgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 387  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  355 tatgttttgcttcgttactagttttagtcctttctggtagtttctct 401  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 38935783 - 38935715
Alignment:
Q  74 ctaatgtcatgtggctttctctcattttcttttcatcactctttcataactc--tttaattataaaata 140  Q
    |||||| |||||| |||||| || | ||||||| ||||||||||||||||||  |||||||||||||||    
T  38935783 ctaatgacatgtgactttctttcttattcttttaatcactctttcataactctttttaattataaaata 38935715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 46142 - 46236
Alignment:
Q  66 ctttcatgctaatgtcatgtggctttctctcattttcttttcatcactctttcataactctttaattataaaatagctgatttaattgtctcaac 160  Q
    ||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  46142 ctttcatactaatgccatgtggctttctctccttttcttttaatcactctttcataactctttaattataaaatggctgatttaattgtcacaac 46236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 46307 - 46423
Alignment:
Q  153 gtctcaactatgaagggttttgtgcgctaattttggttttctctaaaa-tatcatttgcttttcataaagtttataaaatggaagagttttggtatttag 251  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||  |||||| ||| |||| ||||||||| ||||||||    
T  46307 gtctcaactatgaagggttttgtgcgctaacttttgttttctctaaaattatcatttggttttc--aaagttcatacaatgaaagagttttagtatttag 46404  T
Q  252 tgtgacataaataatttta 270  Q
     |||||||||||| |||||    
T  46405 cgtgacataaatattttta 46423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  323 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtccttt 387  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||||||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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