View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_high_6 (Length: 450)
Name: NF17688_high_6
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 31386262 - 31385850
Alignment:
| Q |
15 |
cataggtaatcccttgcaactaatgctccttgatataggatggtgttaaatatagaaatgtgctcacatgagaaacaactggtgctgtggattctagtat |
114 |
Q |
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| T |
31386262 |
cataggtaatcccttgcaactaatgctccttgatataggatggtgt-aaatataggaatgtgctcacatgagaaacaactggtgctgtggattctagtat |
31386164 |
T |
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| Q |
115 |
tgtcaaatcatgattatagctaggtggaatttgaacaaataatagttaatgttttgtgatagttatttagttcaaagtgttgtcaaataacagctataga |
214 |
Q |
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| T |
31386163 |
tgtcaaatcatgattatagctaggtggaatttgaacaaata---gttaatgttttgtgatagttatttagttcaaagtgttgtcaaataacagctataga |
31386067 |
T |
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| Q |
215 |
accgctataacttatagcatagcgaaatttggataaattgctatattccgcactcagcgattgacaacactggtggagtttagttttattcattagtgac |
314 |
Q |
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| T |
31386066 |
accgctataacttatagcatagcgaaattcggataaactgctatattccgcgctcagcgattgaccacactggtggagtttagttttattcattagtgac |
31385967 |
T |
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| Q |
315 |
ttgttgcaccaacttgcaacattttacagatgtatagttatggttatttgatagcatcatttatgtagtttttccaacttgattacaatctacattgtat |
414 |
Q |
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| T |
31385966 |
ttgttgcaccaacttgcaacattttacagatgtatagttatggttatttgatagcatcatttatgtagtttttccaacttgattacaatctacattgtat |
31385867 |
T |
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| Q |
415 |
ggtattgataaaaacct |
431 |
Q |
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| T |
31385866 |
ggtattgataaaaacct |
31385850 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 14399834 - 14399884
Alignment:
| Q |
164 |
tgttttgtgatagttatttagttcaaagtgttgtcaaataacagctataga |
214 |
Q |
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| T |
14399834 |
tgttttgtgatagctatttagtacaaagtgttgtcaaatagcagctataga |
14399884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 5048525 - 5048561
Alignment:
| Q |
177 |
ttatttagttcaaagtgttgtcaaataacagctatag |
213 |
Q |
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| T |
5048525 |
ttatttagtacaaagtgttgtcaaataacagttatag |
5048561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 56049815 - 56049769
Alignment:
| Q |
179 |
atttagttcaaagtgttgtcaaataacagctatagaaccgctataac |
225 |
Q |
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| T |
56049815 |
atttagtacaaagtgttgtcaaatagcagctatagtagcgctataac |
56049769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 31235242 - 31235209
Alignment:
| Q |
179 |
atttagttcaaagtgttgtcaaataacagctata |
212 |
Q |
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| T |
31235242 |
atttagttcaaagtgttgtcaaatagcagctata |
31235209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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