View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_high_8 (Length: 411)
Name: NF17688_high_8
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 111 - 395
Target Start/End: Complemental strand, 41224421 - 41224137
Alignment:
| Q |
111 |
aaatctcaatccttaactagtgtttctcctttattatttcaaatttcaaaaccttcccctctatatttcaatcatctagatattccacattattttctca |
210 |
Q |
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| T |
41224421 |
aaatctcaatccttaactagtgtttctcctttattatttcaaatttcaaaaccttcccctctatatttcaatcatctagatattccacatttttttctca |
41224322 |
T |
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| Q |
211 |
cannnnnnncagcatgagagaggatcgtaannnnnnnnnnnnngaagttagagaggatcataatcaccacaacaatcatggcgtaaatgtttttggttag |
310 |
Q |
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| T |
41224321 |
catttttttcagcatgagagaggatcatgattttttcttttttgaagttagagaggatcataatcaccacaacaatcatggcgtaaatgtttttggttag |
41224222 |
T |
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| Q |
311 |
gaaaacctcaaaagcttagtaacattgcatcatcctactaggtcttgaatataagttgaccgtactcgtgaaccatggaacatcc |
395 |
Q |
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| T |
41224221 |
gaaaacctcaaaagcttagtaacattgcatcatcctactaggtcttgaatataagttgaccgtactcgtgaaccatggaacatcc |
41224137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 41224565 - 41224447
Alignment:
| Q |
1 |
atgatatcaaataaattaactaggtaagcnnnnnnnttaccatcactccatttgtgcccaacaacaagaagtgaatcatcgctatttctcctcctatttt |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41224565 |
atgatatcaaataaattaactaggtaagcaaaaaaattaccatcactccatttgtgcccaacaacaagaagtgaatcgtcgctatttctcctcctatttt |
41224466 |
T |
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| Q |
101 |
ctcaagtttcaaatctcaa |
119 |
Q |
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| T |
41224465 |
ctcaagtttcaaatctcaa |
41224447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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