View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_1 (Length: 642)
Name: NF17688_low_1
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 9714900 - 9715235
Alignment:
| Q |
10 |
agattattcttggattgaagatgatggtgctcaaccatggtggaaaactacggatagaaatgaattagctttcttggttttgcagaaatcactcaattat |
109 |
Q |
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| T |
9714900 |
agattattcttggattgaagatgacggtgctcaaccatggtggaaaactacggatagaaatgaattagctttcttggttttgcagaaatcactcaattat |
9714999 |
T |
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| Q |
110 |
gttgagaattgtgatcttcctcctcctcgagagaagtatctaggagaacaatcatatgcgagtataagtgattacaatataaaaacatgttttgattgtg |
209 |
Q |
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| T |
9715000 |
gttgagaattgtaatcttcctcctcctcgagagaagtatctaggagaacaatcatatgcgggaataagtgattacaatataaaaacatgttttgattgtg |
9715099 |
T |
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| Q |
210 |
aagctaaatccagtgtcttttccaattttactgctgaggcaaaggaaggtttggattcaggattgatgcatagaaagatggagactccatccaatgaagg |
309 |
Q |
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| T |
9715100 |
aagctaaatctagcatcttttccaattttgctgctgaggcaaaggaaggtttggattcaagattgatgcatagaaagatggagactccatccaatgaagg |
9715199 |
T |
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| Q |
310 |
gcattcatctttttcttctgacgtatcaaggtattt |
345 |
Q |
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| T |
9715200 |
gcatttatctttttcttctgacaaatcaaggtattt |
9715235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 630
Target Start/End: Original strand, 9715310 - 9715339
Alignment:
| Q |
601 |
tatatgacatatttttgtttatgatgtttt |
630 |
Q |
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| T |
9715310 |
tatatgacatatttttgtttatgatgtttt |
9715339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 48877425 - 48877359
Alignment:
| Q |
69 |
atgaattagctttcttggttttgcagaaatcactcaattatgttgagaattgtgatcttcctcctcc |
135 |
Q |
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| T |
48877425 |
atgagttagcttcctttgtttcacacaaatcactcaaccatattgagaattgtgatcttcctcctcc |
48877359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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