View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_11 (Length: 371)
Name: NF17688_low_11
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 33104121 - 33103774
Alignment:
| Q |
1 |
gttaccatcactttcattccactgccattgtaccctcttcattgttttatgattgttcgttcttttttcaataaattattaaatttttcatggtacaaaa |
100 |
Q |
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| T |
33104121 |
gttaccatcactttcatttcactgccattgtaccctcttcattgttttatgattgttc----ttttttcaataaattattaaatttttcatggtacaaaa |
33104026 |
T |
|
| Q |
101 |
gaaaattactaacatgatataattgagatga---gtagtatatgtacaataattaaattactttattgttgaaaatataatggaaataaatgggattgga |
197 |
Q |
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| T |
33104025 |
gaaaattactaacatgatataattgagatgattagtagtatatgtacaataattaaattaatttactgttgaaaatataatggaaat----gggattgga |
33103930 |
T |
|
| Q |
198 |
agcaataatggtgtttaatgtaaaagaggaaagtaattgcaaagaaaggaaagaatgaaattattgtataaggaggaatttggagaaaaatgtgactact |
297 |
Q |
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| T |
33103929 |
agcaataatggtgtttaatgtaaaagaggaaagtaattgcaaagaaaggaaagaatgaaattattgtataaggaggaatttggagaaaaatgtgactact |
33103830 |
T |
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| Q |
298 |
cacctaaactgaacatagccattccaagaccagcatcagacagtatggagattgat |
353 |
Q |
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| T |
33103829 |
cacctaaactgaacatagccattccaagaccagcatcagacagtatggagattgat |
33103774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 52718021 - 52717971
Alignment:
| Q |
299 |
acctaaactgaacatagccattccaagaccagcatcagacagtatggagat |
349 |
Q |
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| T |
52718021 |
acctagactgaacatggccattccaagaccagcatcagacagtattgagat |
52717971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 10836992 - 10837053
Alignment:
| Q |
292 |
actactcacctaaactgaacatagccattccaagaccagcatcagacagtatggagattgat |
353 |
Q |
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|||||| |||||| || |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10836992 |
actacttacctaagctaaacatagccattccaagaccagcatcagacagtatggaaattgat |
10837053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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