View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_13 (Length: 356)
Name: NF17688_low_13
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 3711321 - 3711104
Alignment:
| Q |
21 |
tggttggacatacccacgtcatcatcagccctagaggtgggg-tgtacctacaaacactcatatattcaagtcagtaagtgtgtaagcgagaggnnnnnn |
119 |
Q |
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| T |
3711321 |
tggttggatatacccacgtcatca---gcccttgaggtgggggtgtacctacaaacactcatatattcaagtcagtaagtgtgtaggcgagaggtttttt |
3711225 |
T |
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| Q |
120 |
naggttagaaagtgtgttccttggaaaatgttgctagttagtctttagagtgggtggattatggtttaatggaccccaaaatccaatcttgaacaattgt |
219 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3711224 |
taggttagaaagtgtgtaccttagaaaatgttgctagttagtctttagagtgggtggattatggtttaatggaccccaaaatccaatcttgaacaattgt |
3711125 |
T |
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| Q |
220 |
cttttcagatagttgtagata |
240 |
Q |
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||||||||||||||||||||| |
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| T |
3711124 |
cttttcagatagttgtagata |
3711104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 3711058 - 3710965
Alignment:
| Q |
248 |
tttctcactcaaacagaatgtcattgttccattattgctctagaatgaatcagacgatacatgttccatcaatggtcctgaccactccatcttc |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3711058 |
tttctcactcaaacagaatgtcattgttccattattgctctagaatgaatcagacgatacctgttccatcaatggtcctgaccactccatcttc |
3710965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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