View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_14 (Length: 341)
Name: NF17688_low_14
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 38379864 - 38380191
Alignment:
| Q |
9 |
agaagcagcagaagaagtccaacaacgaaagcacaaacacactccaccctcaattgcagcaagctgttttttcaatttctctttttcaagcaagtaaact |
108 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38379864 |
agaagaagcagaagaagtccaacaacgaaagctcaaacacactccaccctcaattgcagcaagctgttttttcaatttctctttttcaagcaagtaaact |
38379963 |
T |
|
| Q |
109 |
ttcatcacatcattagcaacatcatatctagaaagaaattgagcctcattgaacgaaacaaatttagtgaattccctaaattcaccccactcaacagacc |
208 |
Q |
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| T |
38379964 |
ttcatcacatcattagcaacaccatatctagaaagaaattgagcctcattgaacgaaacaaatttagtgaattccctaaattcaccccactcaacagacc |
38380063 |
T |
|
| Q |
209 |
gaaatggaagatgattttttatagtcatttgagtaattgattcacgaaccatcctatgatcaatctttttgagcttgaaatgctcggcaatacgagattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38380064 |
gaaatggaagatgattttttatagtcatttgagtaattgattcacgaaccatcctatgatcaatctttttgagcttgaaatgctcggcaatacgagattt |
38380163 |
T |
|
| Q |
309 |
cataaccaaaggacatatgggaatatgt |
336 |
Q |
| |
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||||||||||||||||| |||||||||| |
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| T |
38380164 |
cataaccaaaggacatacgggaatatgt |
38380191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 38369981 - 38370298
Alignment:
| Q |
19 |
gaagaagtccaacaacgaaagcacaaacacactccaccctcaattgcagcaagctgttttttcaatttctctttttcaagcaagtaaactttcatcacat |
118 |
Q |
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||||||||||||||| |||||| ||||||||||||||||| || |||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
38369981 |
gaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacat |
38370080 |
T |
|
| Q |
119 |
cattagcaacatcatatctagaaagaaattgagcctcattgaacgaaacaaatttagtgaattccctaaattcaccccactcaacagaccgaaatggaag |
218 |
Q |
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| T |
38370081 |
cagcgacaacattatctctagaaagagatcgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcccactcagcaaactgaaatggaat |
38370180 |
T |
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| Q |
219 |
atgattttttatagtcatttgagtaattgattcacgaaccatcctatgatcaatctttttgagcttgaaatgctcggcaatacgagatttcataaccaaa |
318 |
Q |
| |
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| | ||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |||| |
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| T |
38370181 |
gtaactttttatagtcatttgagtaaccgaatcacgaaccatcctatgatcaattttgttgagcttgaaatgcttggcaatacgagatttcataatcaaa |
38370280 |
T |
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| Q |
319 |
ggacatatgggaatatgt |
336 |
Q |
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|||||| ||| ||||||| |
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| T |
38370281 |
ggacatttggtaatatgt |
38370298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 38374710 - 38375018
Alignment:
| Q |
19 |
gaagaagtccaacaacgaaagcacaaacacactccaccctcaattgcagcaagctgttttttcaatttctctttttcaagcaagtaaactttcatcacat |
118 |
Q |
| |
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|||||||||||||||||||| | |||||||| || ||| || ||| |||| ||||||||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
38374710 |
gaagaagtccaacaacgaaaactcaaacacattctaccttctattccagctagctgttttttcagtttatctttttgaagcaagtaaactttcatcacat |
38374809 |
T |
|
| Q |
119 |
cattagcaacatcatatctagaaagaaattgagcctcattgaacgaaacaaatttagtgaattccctaaattcaccccactcaacagaccgaaatggaag |
218 |
Q |
| |
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||| ||||| | ||||||| || ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||||||||||| | |||||||||| |
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| T |
38374810 |
catcagcaagaccatatctggatagaaattgagcctcattatcagaaacaaatttggtgaatgccctaaatttatcccactcaacaaagtgaaatggaag |
38374909 |
T |
|
| Q |
219 |
atgattttttatagtcatttgagtaattgattcacgaaccatcctatgatcaatctttttgagcttgaaatgctcggcaatacgagatttcataaccaaa |
318 |
Q |
| |
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| ||| |||||||||||||||||| || |||||||||||||| ||||| ||||||| ||| | ||| ||||||| ||||||||||| |||| |
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| T |
38374910 |
acgatgttttatagtcatttgagtcatcgattcacgaaccatgttatga---------ttgagctcgaagtactcagcaatacaagatttcataatcaaa |
38375000 |
T |
|
| Q |
319 |
ggacatatgggaatatgt |
336 |
Q |
| |
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|||||| ||||||||||| |
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| T |
38375001 |
ggacatttgggaatatgt |
38375018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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