View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_15 (Length: 336)
Name: NF17688_low_15
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 19293862 - 19294161
Alignment:
| Q |
16 |
attcaaaagatgcaaaactacagtttctaaacaaaaattcgttgttaagtctccatttataatcgttccaaattttcgtcagaacacaatataatgttat |
115 |
Q |
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| T |
19293862 |
attcaaaagaagcaaaactacaatttctaaacaaaaattcgttgttaagtctccatttatagtcattccaaatcttcgtcataacacaat-----gttat |
19293956 |
T |
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| Q |
116 |
cctgttaccatcagatgatgatgataaagaaaagaagaaagtataaaaaac-tattaccaacattcaatccacttccttgaagggaaacgcaagcaaggt |
214 |
Q |
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| T |
19293957 |
cctgttaccatcagacgatgatgataaagaaaagaagaaagtataaaaaacctattaccaacatttagtccacttacttaaagggaaacacaagcaaggt |
19294056 |
T |
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| Q |
215 |
accaaccatttctaaaaatcaatttataatgagtatgctacaatgattatatttgtagaaattatttctaaacttgtcataaatgaaaaccatgatatct |
314 |
Q |
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| T |
19294057 |
accaaccatttctaaaaatcaatttataatgagtatgttacaatgattatatttgtagaaattatttctaaacttgtcataaatgaaaaccatgatatct |
19294156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 38 - 304
Target Start/End: Complemental strand, 19295597 - 19295339
Alignment:
| Q |
38 |
gtttctaaacaaaaattcgttgttaagtctccatttataatcgttccaaattttcgtcagaacacaatataatgttatcctgttaccatcagatgatgat |
137 |
Q |
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| T |
19295597 |
gtttctgaacaaaaaaatgttgctaagtctccatttag--tcgttccaaatcttcgtcagaacacaat-----gttattatgttaccataagacgatgat |
19295505 |
T |
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| Q |
138 |
gataaagaaaagaagaaagtataaaaaactattaccaacattcaatccacttccttgaagggaaacgcaagcaaggtaccaaccatttctaaaaatcaat |
237 |
Q |
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| T |
19295504 |
gacatagaaaagaagaaagaataaaataatattactaacattcagtccacttccta-aagggaaatacaagcgaggtaccaaccatttctaaaaattaat |
19295406 |
T |
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| Q |
238 |
ttataatgagtatgctacaatgattatatttgtagaaattatttctaaacttgtcataaatgaaaac |
304 |
Q |
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| T |
19295405 |
ttataatgagtatgttaaaacgattgtttttgtagtaacgatttctaaacttatcatagatgaaaac |
19295339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 31111658 - 31111802
Alignment:
| Q |
150 |
aagaaagtataaaaaactattaccaacattcaatccacttccttgaagggaaacgcaagcaaggtaccaaccatttctaaaaatcaatttataatgagta |
249 |
Q |
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| T |
31111658 |
aagaaagaatcaaaaactacttctaacattcagtccacctacttgaagggaagcacaagcaaggtaccaaccatttttaaaaatcaatttataacaagta |
31111757 |
T |
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| Q |
250 |
tgctacaatgattatatttgtagaaattatttctaaacttgtcata |
295 |
Q |
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| T |
31111758 |
tgctaaaatgattatattggtagtaacaatttctaaa-ttgtcata |
31111802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 10522000 - 10521906
Alignment:
| Q |
153 |
aaagtataaaaaactattaccaacattcaatccacttccttgaagggaaacgcaagcaaggtaccaaccatttctaaaaatcaatttataatgag |
247 |
Q |
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| T |
10522000 |
aaagaataaaaaactacttctaacatccagtccacctacttgaagggaagcacaagcaaggtaccaaccatttctaaaaatcaatttataatgag |
10521906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 10521903 - 10521813
Alignment:
| Q |
205 |
caagcaaggtaccaaccatttctaaaaatcaatttataatgagtatgctacaatgattatatttgtagaaattatttctaaacttgtcata |
295 |
Q |
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| T |
10521903 |
caagcaaggtaccaaccatttctaaaaatcaatttataatgagtaagttaacatgattattttgatagtaacgatttctaaacctgtcata |
10521813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 16100188 - 16100276
Alignment:
| Q |
38 |
gtttctaaacaaaaattcgttgttaagtctccatttataatcgttccaaattttcgtcagaacacaat----ataatgttatcctgttacc |
124 |
Q |
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| T |
16100188 |
gtttctaaacaaaagtttgttgctaagtctccatt--tagccgttccaaatctttgtcagaacacaatgtcgacaatgttatcctgttacc |
16100276 |
T |
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