View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_19 (Length: 294)
Name: NF17688_low_19
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 26492225 - 26491956
Alignment:
| Q |
11 |
cacagactaaaaatgcaactaaaagatgagttatggtccaagtctatgtccacggttctgagaagcaaactgttgctccacttgactttgagattccaaa |
110 |
Q |
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| T |
26492225 |
cacaaactaaaaatgcaactaaaagatgagttatggtccaagtttatgtccacggttctgagaagcaaactgttgctccacttgactttgagattccaaa |
26492126 |
T |
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| Q |
111 |
tgccggctttgagtctgcaactgttgtgtcatttgttgtatcagcgcttgcatctcaggagtcaactctgggagatgagaagatccttctacatcttcaa |
210 |
Q |
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| T |
26492125 |
tgccggctttgagtctgcaactgttgtgtcatttgttgtatcagcgcttgcatctcaggagtcaactctgggagatgagaagatccttctacatcttcaa |
26492026 |
T |
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| Q |
211 |
gaacatctaaaagagatctacgcctcatgttgggaaccaagcttccaagatcatacttcttgtactttgt |
280 |
Q |
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| T |
26492025 |
gaacatctaaaagagatctacgcctcatgttgggagccaagcttccaagaccatacttcttgtaatttgt |
26491956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 26490557 - 26490395
Alignment:
| Q |
117 |
ctttgagtctgcaactgttgtgtcatttgttgtatcagcgcttgcatctcaggagtcaactctgggagatgagaagatccttctacatcttcaagaacat |
216 |
Q |
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||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
26490557 |
ctttgagcctgcaattgttgtgtcatttgttgcatcagcgtgtgcatctcaggagtcaactctgggggatgagaagatccttctgcattgtcaagaacat |
26490458 |
T |
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| Q |
217 |
ctaaaagagatctacgcctcatgttgggaaccaagcttccaagatcatacttcttgtactttg |
279 |
Q |
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| T |
26490457 |
caaaaagagatctacgtctcatgttgggagccaaacttccaagaccaaactttttgtaatttg |
26490395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 19077943 - 19077895
Alignment:
| Q |
11 |
cacagactaaaaatgcaactaaaagatgagttatggtccaagtctatgt |
59 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19077943 |
cacaaactaaaaatgcaactaaaagatgagttatggtccaagtctatgt |
19077895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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