View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_2 (Length: 615)
Name: NF17688_low_2
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 14 - 600
Target Start/End: Complemental strand, 33103796 - 33103187
Alignment:
| Q |
14 |
catcagacagtatggagattgatttctctattattttaggcatatgcacatgccacctacaatcaaaattaataatcatcaaaccaaacttatataaaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33103796 |
catcagacagtatggagattgatttctctattattttaggcatatgcacatgccacctacaatcaaaattaataatcataaaaccaaacttatataaaaa |
33103697 |
T |
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| Q |
114 |
ctctacaggaatcactagtagaagt---------------caaaaagtcaaaaa--------agcaacttaaagtaatcgattttgcggtcaattaaata |
190 |
Q |
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||||||||||||||||||||| ||| | | |||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
33103696 |
ctctacaggaatcactagtagtagtagtaaacagttactgctagaagtcaaaaagtcaaaaaagcaacttaaagtaatcgattttgcggtcaattaatta |
33103597 |
T |
|
| Q |
191 |
tgattttgactttaatttacctaaatgccacaagagaccaaattagaccaatgaggctggagtacgtgtttgggttacggataagcttccgccaaaccat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33103596 |
tgattttgactttaatttacctaaatgccacaagagaccaaattagaccaatgaggctggagtacgtgtttgggttacggataagcttccgccaaaccat |
33103497 |
T |
|
| Q |
291 |
gatcagaatgagacgggtcataacacttgccggaggcatatgtttcacggtggctgttgggtgtagctccgccgttgagctggatcctcctagcttgttc |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33103496 |
gatcagaatgagacgggtcataacacttgccggaggcatgtgtttcacggtggctgttgggtgtagctccgccgttgagctggatcctcctagcttgttc |
33103397 |
T |
|
| Q |
391 |
agggcagctggttccactttccctacctcatcttctaccagcaattcttcttcttttactggaaacttcaactcttccccaccaagctctgtttctggca |
490 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33103396 |
agggcagctggttccactttccctacctcttcttctaccagcaattcttcttcttttactggaaacttcaactcttccccaccaagctctgtttcttgca |
33103297 |
T |
|
| Q |
491 |
taccttcatttttaacatataatcaacaaatcaaaatcaatttcacatttcacaatattgttaaattcttcaacaatataaaaaatttgcatacctttgt |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33103296 |
taccttcatttttaacatataatcaacaaatcaaaatcaatttcacatttcacaatattgttaaattcttcaacaatataaaaaatttgcatacctttgt |
33103197 |
T |
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| Q |
591 |
tggtaatatt |
600 |
Q |
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|||||||||| |
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| T |
33103196 |
tggtaatatt |
33103187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 10837282 - 10837403
Alignment:
| Q |
208 |
tacctaaatgccacaagagaccaaattagaccaatgaggctggagtacgtgtttgggttacggataagcttccgccaaaccatgatcagaatgagacggg |
307 |
Q |
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|||||||| || ||||| |||||||| ||||||||||| || || || |||||||| |||||||||||||||| ||||||||| || || |||||||| | |
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| T |
10837282 |
tacctaaaggcaacaagggaccaaataagaccaatgagacttgaataagtgtttggattacggataagcttcctccaaaccataatgagtatgagacgtg |
10837381 |
T |
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| Q |
308 |
tcataacacttgccggaggcat |
329 |
Q |
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|||| || || ||||||||||| |
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| T |
10837382 |
tcatgacgctcgccggaggcat |
10837403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 10837031 - 10837088
Alignment:
| Q |
14 |
catcagacagtatggagattgatttctctattattttaggcatatgcacatgccacct |
71 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |
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| T |
10837031 |
catcagacagtatggaaattgatttctctattattttaggcatatgaacatcccacct |
10837088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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