View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_20 (Length: 265)
Name: NF17688_low_20
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 51930544 - 51930787
Alignment:
| Q |
1 |
catcgatttattgttttcaaatatgaatgaatgaatggactatattcgtccaggacaaaatatagtatcttcattttttctttagacaaaaaatatagta |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51930544 |
catcgatttattgttttcaaatatgaatg--------gactatattcgtccaggacaaaatatagtatcttcattttttctttagacaaaaaatatagta |
51930635 |
T |
|
| Q |
101 |
tctttgtgcctgcgtttnnnnnnnnnnttttatatttgtattagactctttacttgtgtggataattagagtgacaacaatttctatattgggttagtct |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51930636 |
tctttgtgcctgcgtttaaaaaaaaaattttatatttgtattagactctttacttgtgtggataattagagtgacaacaatttctatattgggttagtct |
51930735 |
T |
|
| Q |
201 |
atagtactctacacatatatttgctctgactataactgaaacctcgttagta |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51930736 |
atagtactctacacatatatttgctctgactataactgaaacctcgttagta |
51930787 |
T |
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