View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17688_low_22 (Length: 253)

Name: NF17688_low_22
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17688_low_22
NF17688_low_22
[»] chr1 (10 HSPs)
chr1 (11-207)||(33459048-33459244)
chr1 (78-175)||(28552116-28552213)
chr1 (64-230)||(28915408-28915575)
chr1 (118-230)||(36901216-36901327)
chr1 (59-170)||(15099964-15100075)
chr1 (98-161)||(37843662-37843725)
chr1 (83-137)||(49962426-49962480)
chr1 (83-137)||(51536583-51536637)
chr1 (59-170)||(15111192-15111303)
chr1 (93-230)||(46541279-46541412)
[»] chr7 (4 HSPs)
chr7 (78-230)||(44533582-44533733)
chr7 (84-173)||(43497242-43497331)
chr7 (98-228)||(7282076-7282205)
chr7 (103-208)||(32810479-32810583)
[»] chr4 (5 HSPs)
chr4 (78-230)||(30534603-30534754)
chr4 (98-180)||(31310701-31310783)
chr4 (103-185)||(24559513-24559595)
chr4 (91-173)||(2724092-2724174)
chr4 (83-161)||(40591787-40591865)
[»] chr3 (7 HSPs)
chr3 (111-227)||(31750879-31750994)
chr3 (84-137)||(29019285-29019338)
chr3 (82-183)||(11471847-11471947)
chr3 (143-230)||(25199250-25199336)
chr3 (83-164)||(26983817-26983897)
chr3 (98-180)||(46612180-46612261)
chr3 (85-222)||(28955811-28955946)
[»] chr8 (2 HSPs)
chr8 (78-230)||(11148952-11149102)
chr8 (153-230)||(2954101-2954177)
[»] chr5 (5 HSPs)
chr5 (83-230)||(9829807-9829953)
chr5 (71-173)||(26342478-26342581)
chr5 (98-230)||(36817126-36817257)
chr5 (78-205)||(4914881-4915007)
chr5 (59-170)||(18616381-18616492)
[»] chr6 (6 HSPs)
chr6 (78-208)||(35214120-35214249)
chr6 (98-208)||(17312275-17312384)
chr6 (92-173)||(8394617-8394698)
chr6 (98-173)||(8406992-8407067)
chr6 (117-161)||(1704274-1704318)
chr6 (98-166)||(19283119-19283187)
[»] scaffold0015 (1 HSPs)
scaffold0015 (84-220)||(43143-43279)
[»] chr2 (4 HSPs)
chr2 (99-220)||(14510894-14511013)
chr2 (85-222)||(474651-474787)
chr2 (83-208)||(25086690-25086814)
chr2 (84-164)||(9253195-9253275)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 33459048 - 33459244
Alignment:
Q  11 aaattatacttgtcgtccattaacttgatttcatataactaacaattctatcatttatcttttttcatgtccttttggtccgtttgaatatgaattttca 110  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33459048 aaattatatttgtcgtccattaactttatttcatataactaactattttgtcatttatcttttttcatgtccttttggtccgtttgaatatgaattttca 33459147  T
Q  111 aacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatacatttgaatct 207  Q
    ||||| |||| |||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33459148 aacatcaaatctaaaatttatatgaaaacatcaatgaagaaccatatatttgaacactaagagtttatatcgaaaataaaaccatacatttgaatct 33459244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 28552213 - 28552116
Alignment:
Q  78 tgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtt 175  Q
    |||||||||| |  ||||| ||||  |||||||| ||  |||| ||||||| |||||||| ||| | |||||||||||||| ||||||||||||||||    
T  28552213 tgtccttttgattggtttgcatatagattttcaagcagcaaatctaaaattcatatgaaaacatgattgaaggaccatatacttgaacactaagagtt 28552116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 28915575 - 28915408
Alignment:
Q  64 tttatcttttttcatgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttga 163  Q
    |||||||||||||| ||  |||| |||||||| ||| ||| ||||||| ||| |||| ||||||| |||| |||| || |||||||||| ||| ||||||    
T  28915575 tttatcttttttcaagtgatttttgtccgtttaaatttga-ttttcaaccatcaaatctaaaattcatataaaac-atgagtgaaggactatagatttga 28915478  T
Q  164 acactaagagtttatatcgaaaataaaaccatacatttga----atctttgaaattcatatgccaattgat 230  Q
    ||| |||||  | ||||||||| ||||| |||| ||||||    |||||  |||||||||||| |||||||    
T  28915477 acaataagaactcatatcgaaa-taaaatcatagatttgattgaatcttaaaaattcatatgcaaattgat 28915408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 36901327 - 36901216
Alignment:
Q  118 aatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatacatttgaatctttgaaattca 217  Q
    ||||||||||| ||||||||   | |||||| ||||||| ||||||| |||| ||||| ||||| ||||||||||||||  ||||||||||  |||| ||    
T  36901327 aatttaaaattcatatgaaaatgtgagtgaaagaccatagatttgaatactatgagttcatatc-aaaataaaaccatagttttgaatcttaaaaatcca 36901229  T
Q  218 tatgccaattgat 230  Q
    || || |||||||    
T  36901228 taagcaaattgat 36901216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 15100075 - 15099964
Alignment:
Q  59 tatcatttatcttttttca-tgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatat 157  Q
    |||||||||| |||||||| |||  |||| ||| ||||| ||||||||||  |||||| |||||||||||| | || ||| ||| ||| ||| |||||||    
T  15100075 tatcatttatattttttcaatgtgattttagtcagtttgcatatgaatttgtaaacatcaaatttaaaattcagatcaaaacatgagt-aagaaccatat 15099977  T
Q  158 atttgaacactaa 170  Q
    |||| ||||||||    
T  15099976 attttaacactaa 15099964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 37843662 - 37843725
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatattt 161  Q
    |||||||||||||||||| |||| ||| ||| |||||||| ||| ||||||||| | |||||||    
T  37843662 atatgaattttcaaacatcaaatctaatattcatatgaaaacataagtgaaggatcgtatattt 37843725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 49962426 - 49962480
Alignment:
Q  83 ttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaa 137  Q
    ||||||| |||||| |||| |||||| ||||||||||| ||||||| ||||||||    
T  49962426 ttttggttcgtttgtatataaattttgaaacattaaatctaaaattcatatgaaa 49962480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 51536637 - 51536583
Alignment:
Q  83 ttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaa 137  Q
    ||||| ||| |||| ||||||||||| ||||||||||| ||||||| ||||||||    
T  51536637 ttttgatccttttgcatatgaattttgaaacattaaatctaaaattcatatgaaa 51536583  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 15111303 - 15111192
Alignment:
Q  59 tatcatttatcttttttc-atgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatat 157  Q
    |||||||||||||||||| | ||  |||| ||| ||||| ||||||||||  |||||| |||||||||| | | || ||| ||| ||| ||| |||||||    
T  15111303 tatcatttatcttttttcaacgtgattttagtcagtttgcatatgaatttgtaaacatcaaatttaaaactcagatcaaaacatgagt-aagaaccatat 15111205  T
Q  158 atttgaacactaa 170  Q
    |||| ||||||||    
T  15111204 attttaacactaa 15111192  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 46541279 - 46541412
Alignment:
Q  93 tttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatata-tttgaacactaagagtttatatcgaaaataaaa 191  Q
    |||| |||||||||||||||||| ||||   ||||||||||||||  || ||||||||| ||| || ||| |||||| |||| | |||||| | ||||||    
T  46541279 tttgtatatgaattttcaaacatcaaat---aaatttatatgaaa-aatgagtgaaggatcatttattttcaacactgagagctcatatcg-atataaaa 46541373  T
Q  192 ccatacatttgaatctttgaaattcatatgccaattgat 230  Q
    ||||| ||  || ||||  |||||||||||| |||||||    
T  46541374 ccatatatccgagtcttgaaaattcatatgcaaattgat 46541412  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 44533733 - 44533582
Alignment:
Q  78 tgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagttta 177  Q
    ||||||||||||||||||| ||||| |||||||| ||| |||||||||||| |||||||| ||| |||||||||| | | |||||||||||||||| | |    
T  44533733 tgtccttttggtccgtttgcatatggattttcaagcatcaaatttaaaattcatatgaaaacatgagtgaaggacaaaagatttgaacactaagagctca 44533634  T
Q  178 tatcgaaaataaaaccatacatttgaatctttgaaattcatatgccaattgat 230  Q
    ||||| ||||||||||||| |||||||||||  |||| ||||||| |||||||    
T  44533633 tatcg-aaataaaaccatagatttgaatcttgaaaatccatatgcaaattgat 44533582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 43497331 - 43497242
Alignment:
Q  84 tttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagag 173  Q
    |||| |||||||||||||||| |||||||||| |||| ||||| | |||||||| ||| || | | || |||||||||||||| ||||||    
T  43497331 tttgatccgtttgaatatgaactttcaaacatcaaatctaaaactcatatgaaaacatgagcggatgatcatatatttgaacattaagag 43497242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 7282205 - 7282076
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatac 197  Q
    ||||| |||||||| ||| ||||  |||||| |||| ||| ||  |||||||||||||  | | |||||||||||| | |||||| ||||||||||| |     
T  7282205 atatgtattttcaagcatcaaataaaaaattcatataaaaacacaagtgaaggaccatggagtagaacactaagagctaatatcg-aaataaaaccaaat 7282107  T
Q  198 atttgaatctttgaaattcatatgccaattg 228  Q
    |||||| | ||| |||||||||||| |||||    
T  7282106 atttgactttttaaaattcatatgcgaattg 7282076  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 32810479 - 32810583
Alignment:
Q  103 aattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatacatttg 202  Q
    ||||||||||||| ||||  |||||| |||| ||| ||| ||||||| || ||| |||| || |||| ||||| ||||| ||| |||||||||| |||||    
T  32810479 aattttcaaacatcaaatccaaaattcatataaaaacatgagtgaagaacaatagatttaaaaactacgagttcatatc-aaattaaaaccatagatttg 32810577  T
Q  203 aatctt 208  Q
    ||||||    
T  32810578 aatctt 32810583  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 30534603 - 30534754
Alignment:
Q  78 tgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagttta 177  Q
    |||||| |||||| ||||  |||||||||||||| ||| |||| |||||||||||||||| ||| |||||||||| | | |||||||||| ||||| | |    
T  30534603 tgtcctattggtctgttttcatatgaattttcaagcatcaaatctaaaatttatatgaaaacatgagtgaaggacaacagatttgaacacgaagagctca 30534702  T
Q  178 tatcgaaaataaaaccatacatttgaatctttgaaattcatatgccaattgat 230  Q
     || | |||||||| |||| |||||||||||| |||| ||||||| |||||||    
T  30534703 aattg-aaataaaatcatagatttgaatctttaaaatccatatgcaaattgat 30534754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 31310783 - 31310701
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatat 180  Q
    ||||||||||||||  ||||||| ||||||| |||||||| ||| ||||||||| |||| | || ||||||||||||| ||||    
T  31310783 atatgaattttcaagtattaaatctaaaattcatatgaaaacatgagtgaaggatcataaacttaaacactaagagttcatat 31310701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 24559595 - 24559513
Alignment:
Q  103 aattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaa 185  Q
    ||||||||||||| |||| ||||||| |||||||| ||| | |||| ||||||| ||||||| |||| ||| | |||||||||    
T  24559595 aattttcaaacataaaatctaaaattcatatgaaaacatgaatgaatgaccatagatttgaaaactatgagctcatatcgaaa 24559513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 2724174 - 2724092
Alignment:
Q  91 cgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagag 173  Q
    |||||| ||||  |||||||||||| ||||||||||||||||| ||| ||| |  ||||||  || |||||||| ||||||||    
T  2724174 cgtttgtatattgattttcaaacatcaaatttaaaatttatatcaaaacataaacgaaggattatgtatttgaatactaagag 2724092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 40591787 - 40591865
Alignment:
Q  83 ttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatattt 161  Q
    ||||||| | |||| |||| |||||| |||||||||||||  |||| ||||||||| || |||||| || |||||||||    
T  40591787 ttttggttcctttgcatataaatttttaaacattaaatttgtaattcatatgaaactatgagtgaaagatcatatattt 40591865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 31750879 - 31750994
Alignment:
Q  111 aacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatacatttgaatctttg 210  Q
    ||||| |||| ||||||| ||||||||  || ||| || |||||||||||||||||||||||  ||||||| |||||||||||||| |||||||||||      
T  31750879 aacatcaaatataaaattcatatgaaaatataagtaaaagaccatatatttgaacactaagaacttatatc-aaaataaaaccatagatttgaatcttga 31750977  T
Q  211 aaattcatatgccaatt 227  Q
    |||||||||||| ||||    
T  31750978 aaattcatatgcaaatt 31750994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 29019338 - 29019285
Alignment:
Q  84 tttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaa 137  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||    
T  29019338 tttggtccgtttgcatatgaattttcaagcatcaaatttaaaattaatatgaaa 29019285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 11471847 - 11471947
Alignment:
Q  82 cttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatc 181  Q
    |||||||||  |||| ||||| |||||||| ||| |||| ||||||| ||||||||  || ||||||||| |||| ||||||||||||| || | |||||    
T  11471847 cttttggtctttttgcatatgcattttcaagcatcaaatctaaaattcatatgaaaa-atgagtgaaggatcatagatttgaacactaaaagctcatatc 11471945  T
Q  182 ga 183  Q
    ||    
T  11471946 ga 11471947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 25199336 - 25199250
Alignment:
Q  143 agtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatacatttgaatctttgaaattcatatgccaattgat 230  Q
    |||||||||||||| |||| |||||||| |  | |||| |||| |||||| ||| |||||||||||  |||||||||||| |||||||    
T  25199336 agtgaaggaccataaatttaaacactaaaaactcatattgaaa-taaaactatagatttgaatcttaaaaattcatatgcaaattgat 25199250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 26983817 - 26983897
Alignment:
Q  83 ttttggtccgtttgaatatgaattttcaaacattaaattt-aaaatttatatgaaaccattagtgaaggaccatatatttgaa 164  Q
    ||||| |||||||| ||||||||||  |||||| |||||| ||||||||||||||| ||| | |||||||| ||| |||||||    
T  26983817 ttttgttccgtttgtatatgaattt--aaacatcaaattttaaaatttatatgaaaacatgaatgaaggacaataaatttgaa 26983897  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 46612261 - 46612180
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatat 180  Q
    ||||||||||| |||||| |||| |||| |||||| |||| ||| ||||||  |||||| ||||||||| |||||||| ||||    
T  46612261 atatgaatttttaaacatcaaatctaaattttataagaaaacatgagtgaa-aaccatagatttgaacattaagagttcatat 46612180  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 28955811 - 28955946
Alignment:
Q  85 ttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaa 184  Q
    |||||||||||| |||||||  ||||| ||| |||| |||||||| ||| ||| ||| ||| ||| |||||| ||||||||| | |||  | |||| | |    
T  28955811 ttggtccgtttgcatatgaacgttcaagcatcaaatctaaaatttgtat-aaaacatgagtaaagaaccataaatttgaacatttagaactcatattg-a 28955908  T
Q  185 aataaaaccatacatttgaatctttgaaattcatatgc 222  Q
    ||||||| |||| |||||||||||  |||| |||||||    
T  28955909 aataaaatcatagatttgaatcttgaaaatacatatgc 28955946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 11148952 - 11149102
Alignment:
Q  78 tgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagttta 177  Q
    ||||||||||||  ||||| |||||| ||||||| ||| |||| | ||||| |||||||| ||| ||||||| |||||| ||||||||| |||||| |||    
T  11148952 tgtccttttggtatgtttgcatatgagttttcaagcatcaaatct-aaattcatatgaaagcatgagtgaagaaccataaatttgaacattaagagatta 11149050  T
Q  178 tatcgaaaataaaaccatacatttgaatctttgaaattcatatgccaattgat 230  Q
    |||| ||||| ||| |||| ||||| |||||  ||| |||| ||| |||||||    
T  11149051 tatc-aaaatgaaatcatagatttgcatcttgaaaagtcatttgcaaattgat 11149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 2954177 - 2954101
Alignment:
Q  153 catatatttgaacactaagagtttatatcgaaaataaaaccatacatttgaatctttgaaattcatatgccaattgat 230  Q
    |||||||||||| |||||||| | ||||| ||| |||||||||| |||||||||||  ||||| |||||  |||||||    
T  2954177 catatatttgaatactaagagctcatatccaaa-taaaaccataaatttgaatcttgaaaatttatatgtaaattgat 2954101  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 9829807 - 9829953
Alignment:
Q  83 ttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcg 182  Q
    ||||||||| |||| |  ||||||||||| ||| |||| |||||||||||||| | ||| |||||| || ||||| ||||| ||| || |||| |||| |    
T  9829807 ttttggtccatttgcaagtgaattttcaatcatcaaatctaaaatttatatgataacatgagtgaatgatcatatgtttgagcaccaaaagttcatattg 9829906  T
Q  183 aaaataaaaccatacatttgaatctttgaaattcatatgccaattgat 230  Q
     ||||| || |||| |||||||||||  ||||||| |||| |||||||    
T  9829907 -aaatataatcataaatttgaatcttaaaaattcacatgcaaattgat 9829953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 26342478 - 26342581
Alignment:
Q  71 tttttcatgtccttttggtccgtttgaatatgaattttcaaacattaaa-tttaaaatttatatgaaaccattagtgaaggaccatatatttgaacacta 169  Q
    ||||||| ||| |||| |||| |||| ||||  | |||||||||| ||| ||||||||| |||||||| | || ||||| ||||||||||||| ||||||    
T  26342478 tttttcacgtcatttttgtccttttgcatatagactttcaaacatcaaaatttaaaattcatatgaaaaccttggtgaaagaccatatatttggacacta 26342577  T
Q  170 agag 173  Q
    ||||    
T  26342578 agag 26342581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 36817257 - 36817126
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatac 197  Q
    ||||||||||||||  || |||| ||||||| ||||||||   | || ||| || |||| |||||||||||||  ||| |||||| |||||||||||||     
T  36817257 atatgaattttcaagtatcaaatataaaattcatatgaaaatgtgagagaaagatcatagatttgaacactaaatgttcatatcg-aaataaaaccatag 36817159  T
Q  198 atttgaatctttgaaattcatatgccaattgat 230  Q
     ||||||| ||  |||||||||| | |||||||    
T  36817158 ttttgaattttgaaaattcatatccaaattgat 36817126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 4915007 - 4914881
Alignment:
Q  78 tgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagttta 177  Q
    |||| |||||||  ||||| |||| ||||||||||||| |||| ||||||| |||||||| ||| | |||| || |||| |||| || || ||||| | |    
T  4915007 tgtcattttggtttgtttgcatataaattttcaaacatcaaatctaaaattcatatgaaaacatgaatgaatgatcataaatttaaatacgaagagctca 4914908  T
Q  178 tatcgaaaataaaaccatacatttgaat 205  Q
    |||  |||||||||| ||| ||||||||    
T  4914907 tat-taaaataaaactatagatttgaat 4914881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 18616381 - 18616492
Alignment:
Q  59 tatcatttatcttttttc-atgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatat 157  Q
    |||||||||||||||||| | ||  |||| ||| ||||| ||||||||||  |||||| |||||||||| | | || ||| ||| ||| ||| |||||||    
T  18616381 tatcatttatcttttttcaacgtgattttagtcagtttgcatatgaatttgtaaacatcaaatttaaaactcagatcaaaacatgagt-aagaaccatat 18616479  T
Q  158 atttgaacactaa 170  Q
    |||| ||||||||    
T  18616480 attttaacactaa 18616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 35214249 - 35214120
Alignment:
Q  78 tgtccttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagttta 177  Q
    |||||||||| |  ||||| ||||||||||  || | | ||||||||||| ||||| ||| ||| ||||||| |||||| |||| ||||  ||||||| |    
T  35214249 tgtccttttgatttgtttgcatatgaatttctaagcttcaaatttaaaatgtatataaaaacatgagtgaagaaccataaatttaaacatgaagagttca 35214150  T
Q  178 tatcgaaaataaaaccatacatttgaatctt 208  Q
    ||||| |||||||| |||| |||||||||||    
T  35214149 tatcg-aaataaaatcatagatttgaatctt 35214120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 17312275 - 17312384
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccatac 197  Q
    ||||| |||||||| |||| ||| ||||| | |||||||| ||| ||||||| |||||| ||||||||| |||||| | | || |||| |||||||| |     
T  17312275 atatggattttcaagcattgaatataaaactcatatgaaaacatgagtgaagaaccatagatttgaacattaagagctcaaattgaaa-taaaaccaaag 17312373  T
Q  198 atttgaatctt 208  Q
    |||||||||||    
T  17312374 atttgaatctt 17312384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 8394698 - 8394617
Alignment:
Q  92 gtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagag 173  Q
    ||||| ||||| |||||||||||| |||| ||||||| |||||||| ||  || ||| || ||||||||||||| |||||||    
T  8394698 gtttgcatatggattttcaaacatcaaatctaaaattcatatgaaaacaagagcgaaagatcatatatttgaacgctaagag 8394617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 8406992 - 8407067
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagag 173  Q
    ||||| ||||| |||||| |||| ||||||| |||||||| ||  |||||| || ||||||||||||| |||||||    
T  8406992 atatggatttttaaacatcaaatctaaaattcatatgaaaacaggagtgaaagatcatatatttgaacgctaagag 8407067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 1704318 - 1704274
Alignment:
Q  117 aaatttaaaatttatatgaaaccattagtgaaggaccatatattt 161  Q
    |||||||||||| ||||||||  || |||||||||||||||||||    
T  1704318 aaatttaaaattcatatgaaaatatgagtgaaggaccatatattt 1704274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 19283119 - 19283187
Alignment:
Q  98 atatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaaca 166  Q
    ||||| |||||||| ||| |||||||||||| || | ||| ||| | |||||||||||||||| |||||    
T  19283119 atatggattttcaagcatcaaatttaaaattcatgttaaagcatgaatgaaggaccatatattcgaaca 19283187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 43143 - 43279
Alignment:
Q  84 tttggtccgtttgaatatgaattttcaaacattaaattta-aaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcg 182  Q
    |||||||  |||||||||| |||||||| ||| ||||||  |||||  || |||| ||| |||||| | ||||| |||||||||||||||||| ||||      
T  43143 tttggtctatttgaatatggattttcaagcatcaaatttttaaattcttaagaaaacatgagtgaatggccatagatttgaacactaagagttcatat-t 43241  T
Q  183 aaaataaaaccatacatttgaatctttgaaattcatat 220  Q
    ||||||||| |||  |||||||||||  ||||||||||    
T  43242 aaaataaaatcattgatttgaatcttgaaaattcatat 43279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 14510894 - 14511013
Alignment:
Q  99 tatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaaaataaaaccataca 198  Q
    ||||||| || || ||| |||||||||||| ||||||||  |  | |||||||||||||||||||||||||| |  ||||||| |||||||||  ||| |    
T  14510894 tatgaatctttaagcatcaaatttaaaattcatatgaaat-acaaatgaaggaccatatatttgaacactaaaaacttatatc-aaaataaaattataga 14510991  T
Q  199 tttgaatctttgaaattcatat 220  Q
    ||||||||||  ||||||||||    
T  14510992 tttgaatcttgaaaattcatat 14511013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 474787 - 474651
Alignment:
Q  85 ttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcgaa 184  Q
    ||||||| |||| |||||||||||||| | | |||||||| ||| ||||| || |||  ||||||||||||| ||||||| ||| |||  | | |  |||    
T  474787 ttggtccttttgcatatgaattttcaagcttcaaatttaagattcatatgcaaacatgggtgaaggaccatagatttgaagactgagaactcaca-ggaa 474689  T
Q  185 aataaaaccatacatttgaatctttgaaattcatatgc 222  Q
    |||||||||||  ||||||| |||  ||||||||||||    
T  474688 aataaaaccatcgatttgaagcttgaaaattcatatgc 474651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 25086814 - 25086690
Alignment:
Q  83 ttttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaacactaagagtttatatcg 182  Q
    |||||| ||||||  ||||||||||||||   |  |||||||| || |||| |||  |||||||||||||| || |||| |||| |||||||| ||||      
T  25086814 ttttggcccgtttttatatgaattttcaagtttcgaatttaaagttcatataaaaatattagtgaaggaccgtagatttaaacattaagagttcatat-t 25086716  T
Q  183 aaaataaaaccatacatttgaatctt 208  Q
    |||||||||||| | |||| ||||||    
T  25086715 aaaataaaaccagaaatttaaatctt 25086690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 9253195 - 9253275
Alignment:
Q  84 tttggtccgtttgaatatgaattttcaaacattaaatttaaaatttatatgaaaccattagtgaaggaccatatatttgaa 164  Q
    |||||| | |||| |||||||||||||| ||| |||| ||| |||||||| ||| |||   |||| |||||||||||||||    
T  9253195 tttggttcatttgcatatgaattttcaagcatcaaatctaagatttatatcaaaacatagatgaaagaccatatatttgaa 9253275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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