View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17688_low_25 (Length: 240)

Name: NF17688_low_25
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17688_low_25
NF17688_low_25
[»] chr5 (19 HSPs)
chr5 (105-225)||(30007110-30007230)
chr5 (1-111)||(30006990-30007100)
chr5 (107-223)||(30043770-30043886)
chr5 (105-223)||(29995321-29995439)
chr5 (105-223)||(30068287-30068406)
chr5 (107-223)||(30000996-30001112)
chr5 (18-106)||(29944514-29944602)
chr5 (111-223)||(29944635-29944747)
chr5 (1-106)||(30000885-30000984)
chr5 (126-225)||(29953583-29953682)
chr5 (1-54)||(29995258-29995311)
chr5 (135-223)||(29964860-29964948)
chr5 (135-223)||(30009850-30009938)
chr5 (1-39)||(30043898-30043936)
chr5 (1-90)||(29946502-29946591)
chr5 (1-106)||(29964715-29964820)
chr5 (1-106)||(30009978-30010083)
chr5 (1-84)||(29953469-29953552)
chr5 (1-54)||(30068416-30068469)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 30007110 - 30007230
Alignment:
Q  105 tcgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30007110 tcgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattga 30007209  T
Q  205 gtgggctttatctgaacttct 225  Q
    |||||||||||||||||||||    
T  30007210 gtgggctttatctgaacttct 30007230  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 30007100 - 30006990
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30007100 tttggtgcataattgaaagaagtatgtctacaaagtcttcattacgagttttgtcagtattagtagtctgttcgtgctctgttattatcatctccaaaac 30007001  T
Q  101 ctcatcgaggg 111  Q
    |||||||||||    
T  30007000 ctcatcgaggg 30006990  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 30043886 - 30043770
Alignment:
Q  107 gagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||| ||||||| |    
T  30043886 gagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattgaat 30043787  T
Q  207 gggctttatctgaactt 223  Q
    |||||||||||||||||    
T  30043786 gggctttatctgaactt 30043770  T

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Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 29995321 - 29995439
Alignment:
Q  105 tcgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |  |||||||||||||| |||||||    
T  29995321 tcgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattga 29995420  T
Q  205 gtgggctttatctgaactt 223  Q
     ||||||||||||||||||    
T  29995421 atgggctttatctgaactt 29995439  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 30068406 - 30068287
Alignment:
Q  105 tcgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacga-ttg 203  Q
    |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||| || || |||||||||||||| ||| ||     
T  30068406 tcgagggtgaacaaaatctcgtaattgatcgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgatttt 30068307  T
Q  204 agtgggctttatctgaactt 223  Q
    | ||||||||||||| ||||    
T  30068306 aatgggctttatctgcactt 30068287  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 30000996 - 30001112
Alignment:
Q  107 gagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagt 206  Q
    ||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| || |||||||| | | |  ||| ||||    
T  30000996 gagggtggacaagatctcgtcattgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatcttcaaacgtgatagagt 30001095  T
Q  207 gggctttatctgaactt 223  Q
    |||||||||||||||||    
T  30001096 gggctttatctgaactt 30001112  T

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Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 29944602 - 29944514
Alignment:
Q  18 agaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaacctcatc 106  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||| ||||||| ||||||||||||||| ||||||||    
T  29944602 agaagtatgtctacaaagtcttcatgacgagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacctcatc 29944514  T

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Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 29944635 - 29944747
Alignment:
Q  111 gtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggc 210  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||| || |||||| | | ||||||| ||  ||||||||||||||| |||||||||||    
T  29944635 gtgaacaaaatcatgtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggc 29944734  T
Q  211 tttatctgaactt 223  Q
    |||||| ||||||    
T  29944735 tttatccgaactt 29944747  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30000984 - 30000885
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaac 100  Q
    ||||||||||||||||||||| | |||||||||||||||   || ||   | ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  30000984 tttggtgcataattgaaagaactgtgtctacaaaatctt---tagga---tcgtctgtattagtagtttgttcatgctctgttattatcatctccaaaac 30000891  T

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Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 29953583 - 29953682
Alignment:
Q  126 tcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaacttct 225  Q
    ||||||||||||||||||||||||| ||||| || ||| |||  | |||| || || ||||||||||||||  |||||| ||||||||||| ||||||||    
T  29953583 tcattgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgatacatctgctaccgtgattgaatgggctttatccgaacttct 29953682  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29995311 - 29995258
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgt 54  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  29995311 tttggtgcataattgaaagaagtatgtctacaaaatctttatgatgagttttgt 29995258  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 29964860 - 29964948
Alignment:
Q  135 gaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaactt 223  Q
    |||||||||||||||| ||||| || |||||||| | ||||  | || ||||| |  ||||||||||||||||||||||||||||||||    
T  29964860 gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaactt 29964948  T

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Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 30009938 - 30009850
Alignment:
Q  135 gaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaactt 223  Q
    |||||||||||||||| ||||| || |||||||| | ||||  | || ||||| |  ||||||||||||||||||||||||||||||||    
T  30009938 gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaactt 30009850  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30043898 - 30043936
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatctt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30043898 tttggtgcataattgaaagaagtatgtctacaaaatctt 30043936  T

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Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29946591 - 29946502
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatca 90  Q
    |||||| | ||||||| || ||||||||||| || ||||||| | |||||||||||  |||||| || ||||| ||||||||||||||||    
T  29946591 tttggttcttaattgagagtagtatgtctacgaagtcttcatgatgagttttgtctacattagttgtttgttcatgctctgttattatca 29946502  T

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Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29964820 - 29964715
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaac 100  Q
    ||||||||| |||||| |||||||| || |  |||||||||| ||||  |||||||  ||||||  | ||||| |||||||| |||||||||||||| ||    
T  29964820 tttggtgcacaattgagagaagtatatcaatgaaatcttcatgacgaactttgtctacattagtgctttgttcatgctctgtaattatcatctccaatac 29964721  T
Q  101 ctcatc 106  Q
    ||||||    
T  29964720 ctcatc 29964715  T

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Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30009978 - 30010083
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaac 100  Q
    ||||||||| |||||| |||||||| || |  |||||||||| ||||  |||||||  ||||||  | ||||| |||||||| |||||||||||||| ||    
T  30009978 tttggtgcacaattgagagaagtatatcaatgaaatcttcatgacgaactttgtctacattagtgctttgttcatgctctgtaattatcatctccaatac 30010077  T
Q  101 ctcatc 106  Q
    ||||||    
T  30010078 ctcatc 30010083  T

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Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29953552 - 29953469
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgtta 84  Q
    |||||||||||| || |||||||||||| ||||| |||||||  ||| ||||||||  |||||| || ||||| ||||||||||    
T  29953552 tttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcgatttttgtctacattagtggtttgttcatgctctgtta 29953469  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30068416 - 30068469
Alignment:
Q  1 tttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgt 54  Q
    |||| |||||||||||||||||||||||||| ||||||| || | |||||||||    
T  30068416 tttgatgcataattgaaagaagtatgtctacgaaatctttatgatgagttttgt 30068469  T

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