View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_30 (Length: 221)
Name: NF17688_low_30
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 5967948 - 5967758
Alignment:
| Q |
15 |
cacagagaatacagctaaatttgtcatagaagtgttacatggacacaaaccaaataacatcgcaacaaaacttgatttcatagatagaccaatttgtact |
114 |
Q |
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| T |
5967948 |
cacagagaatacagctaaatttgtcatagaagtgttacatggacacaaaccaaataacatcgcaacaaaacttgatttcatagatagaccaatttgtact |
5967849 |
T |
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| Q |
115 |
tgagtgaaaaaagtgagtattggcaaataatcatgtgtatcaaataagcatcaattccaaataaccatgtgtaccacctagttgtttattg |
205 |
Q |
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| T |
5967848 |
tgagtgaaaaaagtgagtattggcaaataatcatgtgtatcaaataagcatcaattccaaataaccatgtgtaccacctagttgtttattg |
5967758 |
T |
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Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 8716144 - 8716338
Alignment:
| Q |
15 |
cacagagaatacagctaaatttgtcatagaagt---gttacatggacacaaaccaaataacatcgcaacaaaacttgatttcatagatagaccaatttgt |
111 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
8716144 |
cacagagaatacagctaaatttgtcatagaagtagtgttacatggacacaaaccaaataacttcgcaacaaaacttgatttcatagatagaccaattttt |
8716243 |
T |
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| Q |
112 |
acttgagtgaaaa-aagtgagtattggcaaataatcatgtgtatcaaataagcatcaattccaaataaccatgtgtaccacctagttgtttattg |
205 |
Q |
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| T |
8716244 |
acttgagtgaaaaaaagtgagtattggcaaataatcatgtgtatcaaataagcatcaattccaaataaccatgtgtaccacctagttgtttattg |
8716338 |
T |
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