View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_34 (Length: 201)
Name: NF17688_low_34
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 20103764 - 20103587
Alignment:
| Q |
7 |
aggaggagcacagagaacttctagagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctt |
106 |
Q |
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||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
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| T |
20103764 |
aggaggaacacaaagaacttctagataaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcggcactcgtcgcaggcgtctcctt |
20103665 |
T |
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| Q |
107 |
tgctacatcaggcagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagt |
184 |
Q |
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||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
20103664 |
tgctacatcaggcagcgtccccggaggtaatcagaatactggaaaaccaacattcgaaggacagcctgcattcgaagt |
20103587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 20079447 - 20079270
Alignment:
| Q |
7 |
aggaggagcacagagaacttctagagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctt |
106 |
Q |
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||||||| |||| |||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
20079447 |
aggaggaacacaaagaacttctacaaagcagcattgagtggttgaaagacacatcagagtcatgctcagttgtagcagcactcgtcgcaggcgtctcctt |
20079348 |
T |
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| Q |
107 |
tgctacatcaggcagcgtccccggaggcaatcagagtacaggaaaaccaacattcgaaggacaacctgcatttgaagt |
184 |
Q |
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||||||||||||||| ||||| ||||||||| | |||| ||||||| ||||||||||| |||||||||||||| |
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| T |
20079347 |
tgctacatcaggcagtgtccctggaggcaatgaccaatcagggaaaccaaatttcgaaggacagcctgcatttgaagt |
20079270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 36 - 137
Target Start/End: Original strand, 19903647 - 19903748
Alignment:
| Q |
36 |
agcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggca |
135 |
Q |
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|||||||||||||||||| ||||| || ||||| ||||| |||| |||||||||||||| || |||||||||||||||||| ||| ||||| ||||||| |
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| T |
19903647 |
agcattgagtggttgaaaaacacaacagagtcaagctcaattgtggcagcactcgtcgcaggcgtctcctttgctacatcatgcactgtccctggaggca |
19903746 |
T |
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| Q |
136 |
at |
137 |
Q |
| |
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|| |
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|
| T |
19903747 |
at |
19903748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 20130971 - 20130854
Alignment:
| Q |
20 |
agaacttctagagaaaagcattgagtggttgaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggc |
119 |
Q |
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|||||||||| | || |||| | ||||||| | ||| ||| |||| |||||||||| |||||||||| |||| || || ||||||| || |||| | || |
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| T |
20130971 |
agaacttctacaaaatagcactcagtggttaatagaaacaacacaatcatgctcagctgtagcagcaatcgttgccggcatctccttcgcaacattaagc |
20130872 |
T |
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| Q |
120 |
agcgtccccggaggcaat |
137 |
Q |
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|| ||||||||||||||| |
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| T |
20130871 |
agtgtccccggaggcaat |
20130854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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