View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17688_low_4 (Length: 551)
Name: NF17688_low_4
Description: NF17688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17688_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 535
Target Start/End: Complemental strand, 4489366 - 4488846
Alignment:
| Q |
13 |
aatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggataagcacacatggccagaagcagctataatgga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||| |
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| T |
4489366 |
aatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggat--gcaaacatggcaagaagcagctatggtggc |
4489269 |
T |
|
| Q |
113 |
agatataggaaacaaagctcaagttcctatcatatcctttgcagcacctaccataaccccaccgttgatgaataatcgatggccttttctggtgagacta |
212 |
Q |
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|| |||||| ||||||||||||||| |||||||||||| ||| |||||||| |||||||| |||||| | ||| ||||||||||||||||||||| |
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| T |
4489268 |
tgaagtaggaagcaaagctcaagttccagtcatatcctttgtagctcctaccattaccccaccattgatggaagctcggtggccttttctggtgagacta |
4489169 |
T |
|
| Q |
213 |
gctaacaatggtacgacatacataaaatgcattgcagaaatagtgcatgcttattgctggaagagagtagtagtaatctacaaagatgatgggtatggtg |
312 |
Q |
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||||||| |||||| |||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||| | ||||| |||| |
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| T |
4489168 |
gctaacactggtacagcatatataaaatgcattgcagaaatagtgcaggcttatagctggaagaaagtagtagtaatctacgaagataacgggtacggtg |
4489069 |
T |
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| Q |
313 |
gagattatgggatgctaaccctgttacgtgaagcccttcaagatgtggattcaatgattgagcactgcttaatccttcccttgatttcttctctacatga |
412 |
Q |
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||||||| ||||||||| | ||| || ||| || ||||| || ||||| |||||||| |||||| ||||| ||||||| |||||||||||||| || |
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| T |
4489068 |
gagattacgggatgctagctctgctagctgaggcacttcaggacgtggactcaatgatcgagcaccgcttagtccttccaccaatttcttctctacagga |
4488969 |
T |
|
| Q |
413 |
tccaggagagctaattagtaaagagatgattaagttaacccaaacacagtctcgtgtgttcatagtgctgcaatcatcattagaaatggaaattcatttg |
512 |
Q |
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| T |
4488968 |
tccagaagagctagttagtgaagagatgctaaagttaaaacaaacacagtctcgcgttttcatagtgctgaaatcatcattagaaatggcaattcatgtg |
4488869 |
T |
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| Q |
513 |
ttcaaagaagcttcaaaagttgg |
535 |
Q |
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| T |
4488868 |
ttcaaagaagcttcaaaagttgg |
4488846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 4485199 - 4484925
Alignment:
| Q |
13 |
aatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggataagcacacatggccagaagcagctataatgga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4485199 |
aatatgagcccgtgtattgcagccgaagagatgattaatgtgcaaaaggtgcaagtgattatagggat--gcacacatggccagaagcagctataatgga |
4485102 |
T |
|
| Q |
113 |
agatataggaaacaaagctcaagttcctatcatatcctttgcagcacctaccataaccccaccgttgatgaataatcgatggccttttctggtgagacta |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
4485101 |
agatataggaagcaaagctcaagttcctatcatatcctttgcagcacctaccattaccccacctttgatgaataatcgatggccttttctagtgagacta |
4485002 |
T |
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| Q |
213 |
gctaacaatggtacgacatacataaaatgcattgcagaaatagtgcatgcttattgctggaagagagtagtagtaat |
289 |
Q |
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| T |
4485001 |
gctaacaatggtacgacatacataaaatgcattgcagaaatagtgcatgcttattgctggaagagagtagtagtaat |
4484925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 286 - 535
Target Start/End: Complemental strand, 4484127 - 4483878
Alignment:
| Q |
286 |
taatctacaaagatgatgggtatggtggagattatgggatgctaaccctgttacgtgaagcccttcaagatgtggattcaatgattgagcactgcttaat |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4484127 |
taatctacaaagatgatgggtatggtggagattatgggatgctaaccctgttaggtgaagcccttcaagatgtggattcaatgattgagcactgcttaat |
4484028 |
T |
|
| Q |
386 |
ccttcccttgatttcttctctacatgatccaggagagctaattagtaaagagatgattaagttaacccaaacacagtctcgtgtgttcatagtgctgcaa |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4484027 |
ccttcccttgatttcttctctacatgatccaggagagctaattagtaaagagatgattaagttaacccaaacacagtctcgtgtgttcatagtgctgcaa |
4483928 |
T |
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| Q |
486 |
tcatcattagaaatggaaattcatttgttcaaagaagcttcaaaagttgg |
535 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4483927 |
tcatcattagaaatggaaattcatgtgttcaaagaagcttcaaaagttgg |
4483878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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