View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_high_11 (Length: 369)
Name: NF17689_high_11
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 43790333 - 43790671
Alignment:
| Q |
18 |
attccacctagcatcatcaacttgaaagagttgacagtgttaggtgtaggttactgccatttaaatggaaccataccagttggaattggtaaattgaaga |
117 |
Q |
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| T |
43790333 |
attccacctagcatcatcaacttgaaagagttgacagtgttaggtgtaggttactgccatttaaatggaaccataccagttggaattggtaaattgaaga |
43790432 |
T |
|
| Q |
118 |
atcttacatcacttgatttacaaatgaatagttttagtggccatatacctgaagagatacaaggctgtgaaaaccttcaaaattttgcagcatcaaacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43790433 |
atcttacatcacttgatttacaaatgaatagttttagtggccatatacctgaagagatacaaggctgtgaaaaccttcaaaattttgcagcatcaaacaa |
43790532 |
T |
|
| Q |
218 |
catgcttgaaggaaacattccttcctctatagggtcccttaaatcattgaaaattattaatcttgctaataacactctatctggaccgattccttcatcg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43790533 |
catgcttgaaggaaacattccttcctctatagggtcccttaaatcattgaaaattattaatcttgctaataacactctatctggaccaattccttcatcg |
43790632 |
T |
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| Q |
318 |
ttgagttatctttctaacttgacatacctgaattttctt |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43790633 |
ttgagttatctttctaacttgacatacctgaattttctt |
43790671 |
T |
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