View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17689_high_12 (Length: 367)
Name: NF17689_high_12
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 351
Target Start/End: Complemental strand, 33821836 - 33821489
Alignment:
| Q |
4 |
cacgaggcatgattttgatgcaccgtagagaggattcgagttccatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgg |
103 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33821836 |
cacgaggtatgattttgatgcaccgtgaagaggatttgagttcaatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgg |
33821737 |
T |
|
| Q |
104 |
gcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatccaccaagaggttcccagcgtagccagggtaagccccttt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33821736 |
gcaacaaatatttccttccattgacaccattagcgttataactcgcaccacttgttggatccaccaagaggttcccagcgtagccagggtaagccccttt |
33821637 |
T |
|
| Q |
204 |
accgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagtacccatttccaaatgggttcgtcacgaccccagccaat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33821636 |
accgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagtacccatttccaaatgggttcgtcacgaccccagccaat |
33821537 |
T |
|
| Q |
304 |
aaactagccacgttaatcaccatgccgtcaaggcccacatcgttattg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33821536 |
aaactagccacgttaatcaccatgccgtcaaggcccacatcgttattg |
33821489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 40 - 350
Target Start/End: Complemental strand, 33829028 - 33828718
Alignment:
| Q |
40 |
cgagttccatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgt |
139 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33829028 |
cgagtaccatgtttttgttatactagagtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgatgccattagcgt |
33828929 |
T |
|
| Q |
140 |
tataactcgccccacttgttggatccaccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaag |
239 |
Q |
| |
|
||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||| ||||||||||| |||||||| |
|
|
| T |
33828928 |
tataacttgcaccacttgttggatccaccaaaaggttcccagcgtagccagggtaagctcctttaccatacactccagtgcaagccgaagcagcttcaag |
33828829 |
T |
|
| Q |
240 |
aggtgcttctttggggccttgatagtacccatttccaaatgggttcgtcacgaccccagccaataaactagccacgttaatcaccatgccgtcaaggccc |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33828828 |
aggtgcttctttggggccttgatagtacccgtttccaaatgggttcgtcaaggccccagccaacaaactagccacgttaattaccatgccgtcaaggccc |
33828729 |
T |
|
| Q |
340 |
acatcgttatt |
350 |
Q |
| |
|
||||||||||| |
|
|
| T |
33828728 |
acatcgttatt |
33828718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 67 - 278
Target Start/End: Complemental strand, 27003025 - 27002814
Alignment:
| Q |
67 |
gtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatcca |
166 |
Q |
| |
|
|||||||||||||||||| | ||||||| | || ||||||||||| ||||||||||| |||||||||| || || || || ||||||||| ||||| |
|
|
| T |
27003025 |
gtagaacaaaccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccattagcattgtagctagcaccacttgttttatcca |
27002926 |
T |
|
| Q |
167 |
ccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagta |
266 |
Q |
| |
|
|||| |||| |||||| || ||||| ||||| |||||| | | | || || ||||||||||| ||||| | ||| |||||||| || |||||| |||| |
|
|
| T |
27002925 |
ccaaaaggtccccagcataaccaggataagctcctttagcataaacaccggtgcaagccgaagcagcttccaaaggagcttcttttggtccttgaaagta |
27002826 |
T |
|
| Q |
267 |
cccatttccaaa |
278 |
Q |
| |
|
||||| ||||| |
|
|
| T |
27002825 |
accattaccaaa |
27002814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 350
Target Start/End: Complemental strand, 26722306 - 26722023
Alignment:
| Q |
67 |
gtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatcca |
166 |
Q |
| |
|
||||||||| |||||||| | ||||||| | || ||||||||||| ||||||||||| ||||||| || ||||| || || ||||||||| |||| |
|
|
| T |
26722306 |
gtagaacaagccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtcca |
26722207 |
T |
|
| Q |
167 |
ccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagta |
266 |
Q |
| |
|
||| |||| |||||| || ||||| ||||| |||||| | | | || || ||||||||||| ||||| | ||| |||||||| || |||||| | || |
|
|
| T |
26722206 |
gcaaaaggtccccagcataaccaggataagctcctttagcataaacaccggtgcaagccgaagcagcttccaaaggagcttctttaggtccttgaaaata |
26722107 |
T |
|
| Q |
267 |
cccatttccaaatgggttcgtcacgaccccagccaataaactagccacgttaatcaccatgccgtcaaggcccacatcgttatt |
350 |
Q |
| |
|
||||| ||||| || || || ||| ||||| || | |||||| || || || ||||| |||||||| |||||||||||||| |
|
|
| T |
26722106 |
accattaccaaaaggatttgttacggttccagctaaaagactagcaacatttataaccattccgtcaagacccacatcgttatt |
26722023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 350
Target Start/End: Complemental strand, 26992055 - 26991772
Alignment:
| Q |
67 |
gtagaacaaaccgaggttgtcgggtcaaagagtgcgggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatcca |
166 |
Q |
| |
|
||||||||| |||||||| | ||||||| | || ||||||||||| ||||||||||| ||||||| || ||||| || || ||||||||| |||| |
|
|
| T |
26992055 |
gtagaacaagccgaggttttagggtcaacaatagcaggcaacaaatacttccttccattatcaccatttgcattatagctagcaccacttgttttgtcca |
26991956 |
T |
|
| Q |
167 |
ccaagaggttcccagcgtagccagggtaagcccctttaccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagta |
266 |
Q |
| |
|
||| |||| |||||| || ||||| ||||| |||||| | | | || || ||||||||||| ||||| | ||| |||||||| || |||||| | || |
|
|
| T |
26991955 |
gcaaaaggtccccagcataaccaggataagctcctttagcataaacaccggtgcaagccgaagcagcttccaaaggagcttctttaggtccttgaaaata |
26991856 |
T |
|
| Q |
267 |
cccatttccaaatgggttcgtcacgaccccagccaataaactagccacgttaatcaccatgccgtcaaggcccacatcgttatt |
350 |
Q |
| |
|
||||| ||||| || || || ||| ||||| || | |||||| || || || ||||| |||||||| |||||||||||||| |
|
|
| T |
26991855 |
accattaccaaaaggatttgttacggttccagctaaaagactagcaacatttataaccattccgtcaagacccacatcgttatt |
26991772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 350
Target Start/End: Complemental strand, 26996714 - 26996467
Alignment:
| Q |
103 |
ggcaacaaatatttccttccattgacaccattagcgttataactcgccccacttgttggatccaccaagaggttcccagcgtagccagggtaagcccctt |
202 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| || || || ||||||||| |||||||| |||| |||||| || ||||| ||||| |||| |
|
|
| T |
26996714 |
ggcaacaaatacttccttccattatcaccattagcgttgtagctagcaccacttgttttgtccaccaaaaggtccccagcataaccaggataagctcctt |
26996615 |
T |
|
| Q |
203 |
taccgaactctccagtacaagccgaagcggcttcaagaggtgcttctttggggccttgatagtacccatttccaaatgggttcgtcacgaccccagccaa |
302 |
Q |
| |
|
|| | | | || || ||||||||||| ||||| | ||| |||||||| || |||||| | || || || ||||| || || || ||| ||||| || |
|
|
| T |
26996614 |
tagcataaacaccggtgcaagccgaagcagcttccaaaggagcttcttttggtccttgaaaataaccgttaccaaaaggattggttacggttccagctaa |
26996515 |
T |
|
| Q |
303 |
taaactagccacgttaatcaccatgccgtcaaggcccacatcgttatt |
350 |
Q |
| |
|
| |||||| || || || ||||| |||||||| |||||||||||||| |
|
|
| T |
26996514 |
aagactagcaacatttataaccattccgtcaagacccacatcgttatt |
26996467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University