View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17689_high_2 (Length: 600)
Name: NF17689_high_2
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 128 - 581
Target Start/End: Original strand, 40747304 - 40747760
Alignment:
| Q |
128 |
atctcaaagccagtccagagataatagtattgtttaaaagaggtgaaaacttaattagggaggcttacattgatattgattatgcaggttcaacgagaga |
227 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
40747304 |
atctcaaagccagtccagagagaatagtattgtttaaaagaggtggaaacttaattagggaggcttacattgatgttgattatgcaggttcaacgagata |
40747403 |
T |
|
| Q |
228 |
taaaggatttacttcaggatattgtaccttcttgtgtgaaaaaattgttgcttagtggagtaggaagctaagtgtaataggtcgatctagggctaaagca |
327 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
40747404 |
taaaggatttactttaggatattgtaccttcttgtgtgaaaaaattgttgcttagtggagtaggaagcaaagtgtaataggtcgatctagggctaaagta |
40747503 |
T |
|
| Q |
328 |
gaatttagagctaagggacaaggaa---tttgtgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaaggctctatgaaattct |
424 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
40747504 |
gaatttagagctatgggacaaggaaatatttgtgaactattatggatgaaaaaaatgacagaaaatttgatgatataatgtgaaggctctatgaaattgt |
40747603 |
T |
|
| Q |
425 |
tttgtgacaataattcggctattagtattgcatacaatctttttcaacatgacatgacaaaactcattaagattgactgacatttcatcaaagaatagat |
524 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40747604 |
tttgtaacaataaatcggctattagtattgcatacaatctttttcaacatgacatgacaaaactcattaagattgaccgacatttcatcaaagaatagat |
40747703 |
T |
|
| Q |
525 |
agatatcggattgataactaaaacctacattaatcatgtggaatatgtgttcatgaa |
581 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
40747704 |
agatatcggattgataactaaaagctacattaatcatgtggaatatgtgttcatgaa |
40747760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 40746988 - 40747109
Alignment:
| Q |
7 |
gagatgaggtatctcaaggaactcaagtatttcttggaaattattgagataaactactcaaaacaatgcttttctatctcttagagaaattatgtgttta |
106 |
Q |
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||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40746988 |
gagatgaaggatctcgaggaactcaagtatttcttggaaattattgagataaactactcaaaacaatgcttttctatctcttagagaaattatgtgttta |
40747087 |
T |
|
| Q |
107 |
atcgtttgcaggaaataggaaa |
128 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40747088 |
atcgtttgcaggaaataggaaa |
40747109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 555
Target Start/End: Original strand, 27471593 - 27471797
Alignment:
| Q |
351 |
aatttgtgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataattcggctattagt |
450 |
Q |
| |
|
||||| ||||||||| | |||||| |||| || ||||||||| |||| ||||||| ||| ||||||| || ||||||||| | || || | |||| | |
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|
| T |
27471593 |
aatttatgaactattgttaatgaaacaagtctcataagatttgaagatagaatgtgatggccctatgaagttgttttgtgactacaaatcatccattaat |
27471692 |
T |
|
| Q |
451 |
attgcatacaatctttttcaacatgacatgacaaaactcattaagattgactgacatttcatcaaagaatagatagatatcggattgataactaaaacct |
550 |
Q |
| |
|
|||||| | |||||| |||| |||| | |||||||| |||| |||||||| | |||||||||||||| || | |||| |||| |||||||| ||||| |
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|
| T |
27471693 |
attgcacataatcttgttcagaatgaaaggacaaaacacattgagattgaccggcatttcatcaaagataagttggataatggatagataactacaacct |
27471792 |
T |
|
| Q |
551 |
acatt |
555 |
Q |
| |
|
||||| |
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|
| T |
27471793 |
acatt |
27471797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 384 - 492
Target Start/End: Complemental strand, 12543427 - 12543323
Alignment:
| Q |
384 |
agaagatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataattcggctattagtattgcatacaatctttttcaacatgacatgaca |
483 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||||||| || |||||||||||||||| |||||||||||| | |||| |||| |||||||||||| |
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|
| T |
12543427 |
agaagatttgaagttacaatgtgaaggccttatgaaattatt--gtgacaataattcggccattagtattgcacataatc--cttcagcatgacatgaca |
12543332 |
T |
|
| Q |
484 |
aaactcatt |
492 |
Q |
| |
|
|||| |||| |
|
|
| T |
12543331 |
aaacacatt |
12543323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 437
Target Start/End: Complemental strand, 27906340 - 27906260
Alignment:
| Q |
357 |
tgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataa |
437 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||| |||| |||||||||||||||||| || |||| ||||||||| |
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|
| T |
27906340 |
tgaactattgtggatgaaactagtactagaagatttgaagatacgatgtgaaggctctatgaagttgttttttgacaataa |
27906260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 32834842 - 32834781
Alignment:
| Q |
347 |
aaggaatttgtgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaa |
408 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||| |||| |||| | ||||||||||||| |
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|
| T |
32834842 |
aaggaatgtgtgaactattttggatgaaataagtgctagaatattttaagatataatgtgaa |
32834781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 7707665 - 7707743
Alignment:
| Q |
414 |
tatgaaattcttttgtgacaataattcggctattagtattgcatacaatctttttcaacatgacatgacaaaactcatt |
492 |
Q |
| |
|
|||||| || ||||||| |||||| ||||| ||||||||||| || |||||| |||| ||||||| |||||||| |||| |
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|
| T |
7707665 |
tatgaagttgttttgtggcaataaatcggccattagtattgcttaaaatcttgttcagcatgacaagacaaaacacatt |
7707743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 433 - 519
Target Start/End: Complemental strand, 27913966 - 27913878
Alignment:
| Q |
433 |
aataattcggctattagtattgcatacaatctttttcaacatgacatgacaa--aactcattaagattgactgacatttcatcaaagaa |
519 |
Q |
| |
|
||||| ||| |||||||||||||| | |||||| |||||| ||||||||||| ||| |||| ||||| || |||||||||||||||| |
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|
| T |
27913966 |
aataaatcgactattagtattgcagataatcttgttcaacgtgacatgacaattaacacattgagatttaccaacatttcatcaaagaa |
27913878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 29402537 - 29402641
Alignment:
| Q |
272 |
ttgttgcttagtggagtaggaagctaagtgtaataggtcgatctagggctaaagcagaatttagagctaagggacaaggaatttgtgaactattatggat |
371 |
Q |
| |
|
||||||||| | |||||| ||||| ||||||| ||| |||||| || | | ||||||||||||| | || ||||||||||||||| |||||||||| |
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|
| T |
29402537 |
ttgttgcttggaggagtaagaagcaaagtgtagtagttcgatcaagcattgaggcagaatttagagaaatggcacaaggaatttgtgagctattatggac |
29402636 |
T |
|
| Q |
372 |
gaaaa |
376 |
Q |
| |
|
||||| |
|
|
| T |
29402637 |
gaaaa |
29402641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 539
Target Start/End: Original strand, 30996433 - 30996784
Alignment:
| Q |
187 |
gaggcttacattgatattgattatgcaggttcaacgagagataaaggatttacttcaggatattgtaccttcttgtgtgaaaaaattgttgcttagtgga |
286 |
Q |
| |
|
|||||||||| | || |||||||| ||||||||| ||| |||||| ||| ||||| || |||||||| ||||||||| || ||||||||| | ||| |
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|
| T |
30996433 |
gaggcttacactaatgttgattatacaggttcaatgagtgataaaagatctacttgagaatattgtattttcttgtgtagcaaccttgttgctttgagga |
30996532 |
T |
|
| Q |
287 |
gtaggaagctaagtgtaataggtcgatctagggctaaagcagaatttagagctaagggacaaggaatttgtgaactattatggatgaaaaaagtgacaga |
386 |
Q |
| |
|
||| ||||| || ||| | | | ||| || | ||||| |||| ||| ||| | || |||||||||||||||||||| ||||||| || || ||| |
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|
| T |
30996533 |
gtaagaagcaaacagtagttgcccaatcaagaattgaagcaaaattcagatctatgacactaggaatttgtgaactattatagatgaaacaaatgctaga |
30996632 |
T |
|
| Q |
387 |
agatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataattcggctattagtattgcatacaatctttttcaacatgacatgacaaaa |
486 |
Q |
| |
|
|||||||| |||| || ||||||| ||||| | || || |||||| |||| | | |||| ||||||| | |||| | || || |||||||||| | | |
|
|
| T |
30996633 |
agatttgaagatacaacatgaaggccctatggagttgttgtgtgacgataaat-taccattaatattgcacataatcatgtttaatatgacatgactaga |
30996731 |
T |
|
| Q |
487 |
ctcattaagattgactgacatttcatcaaagaatagatagatatcggattgat |
539 |
Q |
| |
|
| ||| |||||||| ||||||||||||||| || |||||| |||||||| |
|
|
| T |
30996732 |
caaattgagattgaccaacatttcatcaaagagaagttagataatggattgat |
30996784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 551
Target Start/End: Original strand, 34199062 - 34199145
Alignment:
| Q |
468 |
tcaacatgacatgacaaaactcattaagattgactgacatttcatcaaagaatagatagatatcggattgataactaaaaccta |
551 |
Q |
| |
|
||||||||| | |||||||| |||| | |||||| ||||||||||||||||| || | |||| ||||||||| ||| |||||| |
|
|
| T |
34199062 |
tcaacatgataagacaaaacacattgaaattgaccgacatttcatcaaagaaaagtttgataatggattgatagctacaaccta |
34199145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 455
Target Start/End: Original strand, 14302530 - 14302634
Alignment:
| Q |
351 |
aatttgtgaactattatggatgaaaaaagtgacagaagatttgatgatataatgtgaaggctctatgaaattcttttgtgacaataattcggctattagt |
450 |
Q |
| |
|
||||||||||||| | | ||||||| | || | |||| |||| | |||| ||||| ||||| | ||||| || |||||||||||||| ||| | |||||| |
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|
| T |
14302530 |
aatttgtgaactaatgtcgatgaaacatgtcatagaaaatttaaagatacaatgtaaaggcgcaatgaagttgttttgtgacaataaatcgaccattagt |
14302629 |
T |
|
| Q |
451 |
attgc |
455 |
Q |
| |
|
||||| |
|
|
| T |
14302630 |
attgc |
14302634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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