View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_high_22 (Length: 247)
Name: NF17689_high_22
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41485071 - 41484841
Alignment:
| Q |
1 |
aatttaactctcttccatgttatattttattgacgtacccgtaccttacnnnnnnnaaaattgccgtattttcgtatcagtacccgtatcgtatcccaat |
100 |
Q |
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| T |
41485071 |
aatttaactttctttcatgttatattttattgacgtacccgtaccttactttttttaaaattgccgtattttcgtatcagtatccgtatcgtaccccaat |
41484972 |
T |
|
| Q |
101 |
gcaatggagcaacttccagaccgaacaacaaaaactatggtaagatcgtctttcctccatcatattttttgttatcttattgcacaagaggtgcttacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484971 |
gcaatggagcaacttccagaccgaacaacaaaaactatggtaagatcgtctttcctccatcatattttttgttatcttattgcacaagaggtgcttacaa |
41484872 |
T |
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| Q |
201 |
acaaacttagacagctgttcaaatacatttt |
231 |
Q |
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| T |
41484871 |
acaaacttagacagctgttcaaatacatttt |
41484841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 408342 - 408411
Alignment:
| Q |
24 |
attttattgacgtacccgtaccttacnnnnnnnaaaattgccgtattttcgtatcagtacccgtatcgta |
93 |
Q |
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| T |
408342 |
attttattgacgtacccgtaccttactttttctaaaattgccgtattctcgtaccagtacctgtatcgta |
408411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 52471727 - 52471688
Alignment:
| Q |
130 |
aaaaactatggtaagatcgtctttcctccatcatattttt |
169 |
Q |
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| T |
52471727 |
aaaaactatggtaagatcatctttcctccattatattttt |
52471688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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