View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17689_high_23 (Length: 236)

Name: NF17689_high_23
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17689_high_23
NF17689_high_23
[»] chr7 (8 HSPs)
chr7 (26-232)||(18987425-18987631)
chr7 (26-232)||(19002052-19002258)
chr7 (31-97)||(18987398-18987464)
chr7 (31-97)||(19002025-19002091)
chr7 (161-207)||(18987637-18987683)
chr7 (161-207)||(19002265-19002311)
chr7 (116-151)||(18961530-18961565)
chr7 (161-227)||(1785741-1785807)
[»] chr1 (1 HSPs)
chr1 (161-220)||(31522506-31522565)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 18987631 - 18987425
Alignment:
Q  26 aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgattgttannnnnnnatttatctatc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||    
T  18987631 aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgatttttatttttttatttatctatc 18987532  T
Q  126 tagaataaccattttgcccttttcttcnnnnnnnntattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattgttcat 225  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  18987531 tagaataaccattttgcccttttcttcaaaaaaaatattcatagatgtctgccacattgtaaattttaactctcaaacatttatcaacaacattgttcat 18987432  T
Q  226 ctcactc 232  Q
    || ||||    
T  18987431 ctgactc 18987425  T

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Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 19002258 - 19002052
Alignment:
Q  26 aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgattgttannnnnnnatttatctatc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||    
T  19002258 aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgatttttatttttttatttatctatc 19002159  T
Q  126 tagaataaccattttgcccttttcttcnnnnnnnntattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattgttcat 225  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  19002158 tagaataaccattttgcccttttcttcaaaaaaaatattcatagatgtctgccacattgtaaattttaactctcaaacatttatcaacaacattgttcat 19002059  T
Q  226 ctcactc 232  Q
    || ||||    
T  19002058 ctgactc 19002052  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 18987464 - 18987398
Alignment:
Q  31 aactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttatttt 97  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  18987464 aactctcaaacatttatcaacaacattgttcatctgactcagcgagaattccatggatatttatttt 18987398  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 19002091 - 19002025
Alignment:
Q  31 aactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttatttt 97  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  19002091 aactctcaaacatttatcaacaacattgttcatctgactcagcgagaattccatggatatttatttt 19002025  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 18987683 - 18987637
Alignment:
Q  161 tattcatagatgtctgccacattgtaaattttatctctccaacattt 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  18987683 tattcatagatgtctgccacattgtaaattttaactctccaacattt 18987637  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 19002311 - 19002265
Alignment:
Q  161 tattcatagatgtctgccacattgtaaattttatctctccaacattt 207  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  19002311 tattcatagatgtctgccacattgtaaattttaactctccaacattt 19002265  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 18961565 - 18961530
Alignment:
Q  116 tttatctatctagaataaccattttgcccttttctt 151  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18961565 tttatttatctagaataaccattttgcccttttctt 18961530  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 1785741 - 1785807
Alignment:
Q  161 tattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattgttcatct 227  Q
    ||||||||||||| ||||||||||  || |||| ||||||  | ||||||||||||||| |||||||    
T  1785741 tattcatagatgtttgccacattgacaaatttaactctccggcgtttatcaacaacatttttcatct 1785807  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 31522565 - 31522506
Alignment:
Q  161 tattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattg 220  Q
    ||||||||||||  ||| |||||| |||||||| ||||| ||| ||||||||||||||||    
T  31522565 tattcatagatggttgctacattgaaaattttaactctctaacgtttatcaacaacattg 31522506  T

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