View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17689_high_26 (Length: 210)

Name: NF17689_high_26
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17689_high_26
NF17689_high_26
[»] chr5 (12 HSPs)
chr5 (13-192)||(35922864-35923043)
chr5 (13-76)||(43262827-43262890)
chr5 (13-102)||(15221696-15221786)
chr5 (18-93)||(36169302-36169378)
chr5 (13-76)||(35922627-35922690)
chr5 (18-70)||(31189710-31189762)
chr5 (16-89)||(43461830-43461904)
chr5 (20-93)||(22169596-22169668)
chr5 (13-91)||(42034888-42034967)
chr5 (13-70)||(19621599-19621656)
chr5 (35-76)||(30704505-30704546)
chr5 (16-92)||(33958878-33958954)
[»] chr4 (10 HSPs)
chr4 (13-76)||(17633468-17633531)
chr4 (13-71)||(24669305-24669363)
chr4 (13-93)||(1966731-1966811)
chr4 (17-83)||(19596691-19596758)
chr4 (13-76)||(55666951-55667014)
chr4 (13-75)||(17633257-17633319)
chr4 (14-75)||(19746950-19747011)
chr4 (14-75)||(19792795-19792856)
chr4 (13-92)||(14351194-14351274)
chr4 (18-93)||(19596920-19596996)
[»] chr1 (12 HSPs)
chr1 (13-91)||(34490320-34490399)
chr1 (13-75)||(5831664-5831726)
chr1 (16-93)||(13351020-13351098)
chr1 (13-93)||(29676982-29677063)
chr1 (13-88)||(13350889-13350965)
chr1 (18-92)||(38952044-38952119)
chr1 (33-98)||(34941696-34941762)
chr1 (18-89)||(42604114-42604186)
chr1 (18-76)||(29677206-29677264)
chr1 (13-89)||(5855012-5855088)
chr1 (13-93)||(5855236-5855317)
chr1 (13-50)||(29168548-29168585)
[»] chr2 (5 HSPs)
chr2 (13-93)||(28527220-28527300)
chr2 (15-75)||(30906180-30906240)
chr2 (13-93)||(1400670-1400751)
chr2 (13-76)||(41212438-41212501)
chr2 (13-93)||(30905947-30906028)
[»] chr7 (11 HSPs)
chr7 (16-92)||(5083690-5083767)
chr7 (13-76)||(28805150-28805213)
chr7 (13-93)||(22740057-22740138)
chr7 (14-93)||(20556902-20556982)
chr7 (13-93)||(18312958-18313039)
chr7 (15-76)||(31303372-31303433)
chr7 (13-77)||(22033192-22033255)
chr7 (17-55)||(15958248-15958286)
chr7 (16-93)||(28804883-28804961)
chr7 (25-93)||(4290970-4291039)
chr7 (13-93)||(32964883-32964964)
[»] chr6 (12 HSPs)
chr6 (13-76)||(22608280-22608343)
chr6 (25-88)||(22608507-22608571)
chr6 (13-93)||(7706964-7707042)
chr6 (13-93)||(9068537-9068621)
chr6 (13-60)||(10304631-10304678)
chr6 (14-73)||(13767125-13767184)
chr6 (13-76)||(24386343-24386406)
chr6 (13-90)||(7915725-7915803)
chr6 (13-75)||(23595074-23595136)
chr6 (16-93)||(30056022-30056100)
chr6 (25-93)||(2835106-2835175)
chr6 (12-76)||(3620885-3620949)
[»] chr3 (11 HSPs)
chr3 (13-76)||(3785881-3785944)
chr3 (18-76)||(9710850-9710908)
chr3 (13-93)||(5342008-5342089)
chr3 (13-92)||(19280329-19280409)
chr3 (13-77)||(22432462-22432526)
chr3 (13-76)||(3823570-3823633)
chr3 (13-59)||(26308571-26308617)
chr3 (27-92)||(27335291-27335357)
chr3 (16-93)||(31545751-31545829)
chr3 (13-75)||(39126297-39126359)
chr3 (13-93)||(11501402-11501483)
[»] chr8 (5 HSPs)
chr8 (13-85)||(31596704-31596777)
chr8 (13-93)||(38606724-38606805)
chr8 (13-72)||(5322089-5322148)
chr8 (13-74)||(24576187-24576248)
chr8 (18-89)||(28700045-28700117)
[»] scaffold1126 (2 HSPs)
scaffold1126 (13-76)||(336-399)
scaffold1126 (13-93)||(104-186)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 35922864 - 35923043
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaagatgtctacctatcattggtgtattttgtttctttca 112  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35922864 cacagaccataaatttggttaacttaaatttttcaaagtgatacaaagcggtgtacacattaagatgtctacctatcattggtgtattttttttctttca 35922963  T
Q  113 cttatttaggtcaaagtaatgctttcaagcactttacttcaacaacaaacaaaaagcataaatcaaccatagtgaacttc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35922964 cttatttaggtcaaagtaatgctttcaagcactttacttcaacaacaaacaaaaagcataaatcaaccatagtgaacttc 35923043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 43262827 - 43262890
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  43262827 cacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaag 43262890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 15221696 - 15221786
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcattggtgtatttt 102  Q
    ||||||||||| |||| |||||||||||||||||| | ||||||||||  ||||||||||| ||| ||||| |||||||||||| ||||||    
T  15221696 cacagaccatatatttagttaactgaaatttttcagaatgatacaaaggagtgtacacattaaaggtgtctgcctatcattggtctatttt 15221786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 36169378 - 36169302
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatcattg 93  Q
    |||||| |||||||||||| ||||||||||||||| ||||||| |  ||||||||||||| ||||||||||||||||    
T  36169378 accatatatttggttaactaaaatttttcaaagtggtacaaagagaagtacacattaagagtgtctacctatcattg 36169302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 35922690 - 35922627
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    |||| |||||| ||||| ||||||||||||||||| |||||||||||| | |||||||||||||    
T  35922690 cacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaag 35922627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 31189710 - 31189762
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacac 70  Q
    |||||| ||||||||||||||||||||| |||||| ||||||| |||||||||    
T  31189710 accatatatttggttaactgaaattttttaaagtggtacaaaggggtgtacac 31189762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 43461830 - 43461904
Alignment:
Q  16 agaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatc 89  Q
    |||||||| ||||| ||||||||||||||  |||||| ||||||| |||  ||||||||||| ||||||||||||    
T  43461830 agaccatatatttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagagtgtctacctatc 43461904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 22169596 - 22169668
Alignment:
Q  20 cataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaagatgtctacctatcattg 93  Q
    ||||||||||||||||| ||| |||||| |||| ||||||| |||||||| |||||| |||  |||||||||||    
T  22169596 cataaatttggttaactaaaaattttcagagtggtacaaag-ggtgtacagattaaggtgtgcacctatcattg 22169668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 42034888 - 42034967
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcat 91  Q
    |||| |||||| ||||| | ||||||||||||| | |||| ||||||| | ||||| |||| ||||||||||||||||||    
T  42034888 cacataccatatatttgatcaactgaaattttttagagtggtacaaagggatgtacgcattaaagatgtctacctatcat 42034967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 19621599 - 19621656
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacac 70  Q
    |||| |||||| ||||||||||||||||||||||| | || |||||||  ||||||||    
T  19621599 cacataccatatatttggttaactgaaatttttcagaatggtacaaaggagtgtacac 19621656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 30704505 - 30704546
Alignment:
Q  35 ctgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||||||||||||| ||||  ||||||||||||||    
T  30704505 ctgaaatttttcaaagtgatataaagaagtgtacacattaag 30704546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 33958954 - 33958878
Alignment:
Q  16 agaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcatt 92  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||| | | |||| ||||| | |||||||||||||||    
T  33958954 agaccatatatttggttaagtgaaatttttcagagtggtacaaag-gatatacatattaagggtgtctacctatcatt 33958878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 17633468 - 17633531
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  17633468 cacagaccatatatttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaag 17633531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 24669305 - 24669363
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacaca 71  Q
    ||||||||||| ||||| |||||| |||||||||| |||| ||||||| ||||||||||    
T  24669305 cacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtacaca 24669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 1966811 - 1966731
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    ||||||||||| |||||||||||||||| |||||| |||| ||||||  |||||| ||| ||| | ||||||||||||||||    
T  1966811 cacagaccatatatttggttaactgaaa-ttttcagagtggtacaaaagggtgtatacagtaagggtgtctacctatcattg 1966731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 19596758 - 19596691
Alignment:
Q  17 gaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtcta 83  Q
    ||||||| ||||||| ||| || |||||||| |||| ||||||| |||||||||||| ||||||||||    
T  19596758 gaccatatatttggtcaacagagatttttcagagtggtacaaaggggtgtacacattaaagatgtcta 19596691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 55666951 - 55667014
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| |||| |||||||||||||||  |||||| |||||||  ||||||| ||||||    
T  55666951 cacagaccatatatttagttaactgaaattttcgaaagtggtacaaaggagtgtacatattaag 55667014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 17633319 - 17633257
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa 75  Q
    ||||||||||| |||||||||||| |||||||||  |||| ||||||   |||||||||||||    
T  17633319 cacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaa 17633257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 19746950 - 19747011
Alignment:
Q  14 acagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa 75  Q
    |||||||||  |||| |||||||||||||||  | | |||||||||| ||||||||||||||    
T  19746950 acagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaa 19747011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 19792856 - 19792795
Alignment:
Q  14 acagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa 75  Q
    |||||||||  |||| |||||||||||||||  | | |||||||||| ||||||||||||||    
T  19792856 acagaccatgtatttagttaactgaaattttcgagaatgatacaaaggggtgtacacattaa 19792795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 14351194 - 14351274
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcatt 92  Q
    |||| |||||| |||||||||||| || ||||| | |||| |||||||  ||| ||||||||| | |||||||||||||||    
T  14351194 cacaaaccatatatttggttaactaaattttttgagagtggtacaaagaagtgcacacattaagggtgtctacctatcatt 14351274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 19596920 - 19596996
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    |||||| |||||||||||||||||||| ||||  | ||||||  | |||||||||||| |  |||||||||||||||    
T  19596920 accatatatttggttaactgaaattttccaaaagggtacaaaaggatgtacacattaagggcgtctacctatcattg 19596996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 34490320 - 34490399
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatcat 91  Q
    ||||||||||| |||| || ||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||||    
T  34490320 cacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgtctacctatcat 34490399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 5831664 - 5831726
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa 75  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||| ||||    
T  5831664 cacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaa 5831726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 13351020 - 13351098
Alignment:
Q  16 agaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcattg 93  Q
    |||||||| |||||||||| | |||||||||| |||| ||||||| |||||||||||| |||||||||| |||||||||    
T  13351020 agaccatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaaagatgtctagctatcattg 13351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 29677063 - 29676982
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcattg 93  Q
    ||||| ||||| |||||||||||| ||||||||||||||| ||||||| |  ||||||||| ||| |||||| |||||||||    
T  29677063 cacaggccatatatttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaaaggtgtctaactatcattg 29676982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 13350965 - 13350889
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctat 88  Q
    |||| |||||| ||||||||||||||||||||  | |||| ||||||  |||||||||||||| |||||||||||||    
T  13350965 cacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtctacctat 13350889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 38952044 - 38952119
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcatt 92  Q
    |||||| |||| |||||||||||||||||| |||||||||||| |||||| || |||| | |||||| ||||||||    
T  38952044 accatacattttgttaactgaaatttttcagagtgatacaaagaggtgtatactttaaggttgtctatctatcatt 38952119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 34941762 - 34941696
Alignment:
Q  33 aactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattggtgta 98  Q
    ||||||||||||||| |||| ||||||| | |||||||||||| ||||||| |||||||||| ||||    
T  34941762 aactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtcttcctatcattgttgta 34941696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 42604186 - 42604114
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatc 89  Q
    |||||| |||||||||| |||||||||| ||| || ||||||  |||||||||||||| | ||||||||||||    
T  42604186 accatacatttggttaattgaaattttttaaaatggtacaaatgggtgtacacattaaggttgtctacctatc 42604114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 29677206 - 29677264
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    |||||| ||||| |||||| |||||||| | |||| ||||||| |||||||||||||||    
T  29677206 accatatatttgtttaacttaaatttttgagagtggtacaaagaggtgtacacattaag 29677264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 5855088 - 5855012
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag-atgtctacctatc 89  Q
    ||||||||||| ||||||||| |||||||||||| ||||  ||||||| | |||| ||||||||  ||||||||||||    
T  5855088 cacagaccatatatttggttagctgaaatttttc-aagtagtacaaagggatgtaaacattaagcgtgtctacctatc 5855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 5855236 - 5855317
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatta-agatgtctacctatcattg 93  Q
    |||| |||||| |||||||||||| |||||||||| |||| ||||||   ||||||| ||||  | ||||||||||||||||    
T  5855236 cacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtacatattagtggtgtctacctatcattg 5855317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 29168548 - 29168585
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaag 50  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  29168548 cacagaccatatatttggttaactgaaattttacaaag 29168585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 28527300 - 28527220
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||| ||||| | ||||||||||||||||    
T  28527300 cacagaccatatatttggttagctgaaatttttcaaagtggtacaaaggggtgtaca-attaagggtgtctacctatcattg 28527220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 30906180 - 30906240
Alignment:
Q  15 cagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa 75  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||||  ||||||||||||||    
T  30906180 cagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaa 30906240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 1400751 - 1400670
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    |||| |||||| ||||||||||||||||||||||| | || ||||||  |||||||||||||| | ||||||||||| ||||    
T  1400751 cacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagggtgtctacctattattg 1400670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 41212438 - 41212501
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| |||||||||||| |||||||||| |||| ||||||| ||| |||| ||||||    
T  41212438 cacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaag 41212501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 30906028 - 30905947
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatcattg 93  Q
    ||||||| ||| || ||||||||| ||| |||||| | || ||||||| | |||||||||||||| ||||||||||||||||    
T  30906028 cacagacaatatatctggttaactaaaaattttcagaatgttacaaagggatgtacacattaagagtgtctacctatcattg 30905947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 5083767 - 5083690
Alignment:
Q  16 agaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcatt 92  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||| ||| || | ||||| |||||||||||||||||    
T  5083767 agaccatatatttgattaactgaaatttttcaaagtgatataaaggggtatatagattaaggatgtctacctatcatt 5083690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 28805150 - 28805213
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    |||| |||||| |||||||||||| |||||||||| |||||||||||| ||| |||||||||||    
T  28805150 cacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaag 28805213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 22740138 - 22740057
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatcattg 93  Q
    ||||||||||| ||||| |||||| |||| ||||| ||||||||| || |||||||||||||||| |||| | |||||||||    
T  22740138 cacagaccatatatttgattaacttaaatatttcagagtgatacatagaggtgtacacattaagagtgtcaatctatcattg 22740057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 20556902 - 20556982
Alignment:
Q  14 acagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    |||||| ||| |||| ||||||||||| |||||||||||||||||||  |||| || ||||| ||| ||||||||||||||    
T  20556902 acagactatatatttagttaactgaaaattttcaaagtgatacaaaggagtgtgcatattaaggatatctacctatcattg 20556982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 18312958 - 18313039
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatcattg 93  Q
    |||| |||||| ||||||||| ||||||||||||| |||| |||||||  |||| |||||||||| ||| ||| ||||||||    
T  18312958 cacaaaccatatatttggttagctgaaatttttcagagtggtacaaaggagtgtgcacattaagagtgtttacgtatcattg 18313039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 31303433 - 31303372
Alignment:
Q  15 cagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||  |||||||| |||||||||||||| |||||||||||  | |||||||||||||    
T  31303433 cagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaag 31303372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 22033192 - 22033255
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga 77  Q
    ||||||||||| |||||||||||| |||||||||| | || ||||||| | ||||||||||||||    
T  22033192 cacagaccatatatttggttaactaaaatttttcagaatggtacaaag-gatgtacacattaaga 22033255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 15958286 - 15958248
Alignment:
Q  17 gaccataaatttggttaactgaaatttttcaaagtgata 55  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  15958286 gaccatatatttggttaacttaaatttttcaaagtgata 15958248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 28804961 - 28804883
Alignment:
Q  16 agaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    |||||||| ||||||||||||||||||||  | | || ||||||  |||||||| ||||| | ||||||||||||||||    
T  28804961 agaccatatatttggttaactgaaattttctagaatggtacaaaagggtgtacatattaagggtgtctacctatcattg 28804883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 4290970 - 4291039
Alignment:
Q  25 atttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcattg 93  Q
    |||||||||||||||||||||||||||  ||||||| | |  ||||||| ||| | ||||||||||||||    
T  4290970 atttggttaactgaaatttttcaaagtagtacaaagagattgacacattaaaggtatctacctatcattg 4291039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 32964883 - 32964964
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcattg 93  Q
    ||||||||||| || | ||||||| |||||||| | |||||||||||  |||||| ||||| ||| ||||||| ||||||||    
T  32964883 cacagaccatatatatagttaacttaaattttttagagtgatacaaaagggtgtatacattaaaggtgtctacatatcattg 32964964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 22608343 - 22608280
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| |||||||||||| |||||||| | |||| ||||||| |||||||||||||||    
T  22608343 cacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaag 22608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 22608507 - 22608571
Alignment:
Q  25 atttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctat 88  Q
    |||||||||||||||| |||||||| |||||||||| |||||||| ||||| | |||||||||||    
T  22608507 atttggttaactgaaaattttcaaaatgatacaaaggggtgtacatattaaaagtgtctacctat 22608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 7706964 - 7707042
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaagatgtctacctatcattg 93  Q
    ||||||| ||| |||| |||||||||||||||| ||| ||||||||||  ||||| |||  |||||||| |||||||||||    
T  7706964 cacagactatatatttagttaactgaaattttttaaaatgatacaaaggagtgtataca--aagatgtcaacctatcattg 7707042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 9068537 - 9068621
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa----gatgtctacctatcattg 93  Q
    |||| |||||| ||||| |||||| |||||||||| |||| ||||||  ||||||||||||||    |||||||||| |||||||    
T  9068537 cacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaataaggatgtctaccgatcattg 9068621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 10304678 - 10304631
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaag 60  Q
    ||||||||||| ||||||||||||||||||||| | |||| |||||||    
T  10304678 cacagaccatatatttggttaactgaaattttttagagtggtacaaag 10304631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 13767184 - 13767125
Alignment:
Q  14 acagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt 73  Q
    |||||||||| |||||||||||| |||||||  | ||||||||||||  |||||||||||    
T  13767184 acagaccatatatttggttaacttaaattttctagagtgatacaaaggagtgtacacatt 13767125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 24386343 - 24386406
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| |||||||||||| ||||||||||  ||| || |||| | |||||||||||||    
T  24386343 cacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaag 24386406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 7915725 - 7915803
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag-atgtctacctatca 90  Q
    ||||||| ||| ||||| ||||||||||||||||| |||| || ||   ||||||||||||||| ||||||| ||||||    
T  7915725 cacagacgatatatttgattaactgaaatttttcagagtggtaaaagagggtgtacacattaagaatgtctatctatca 7915803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 23595136 - 23595074
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa 75  Q
    ||||||||||| |||| ||||||| |||||||  | |||||||||||  ||||||||||||||    
T  23595136 cacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaa 23595074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 30056100 - 30056022
Alignment:
Q  16 agaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcattg 93  Q
    |||||||| ||||||||||||||||||||| | |||  ||||||| || ||| ||||| ||| ||||||||||| ||||    
T  30056100 agaccatatatttggttaactgaaattttttagagttgtacaaaggggagtatacattaaaggtgtctacctattattg 30056022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 2835106 - 2835175
Alignment:
Q  25 atttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    |||||||||||| |||||||||| |||| ||||||  | | |||||||||| | ||||||||||||||||    
T  2835106 atttggttaacttaaatttttcagagtggtacaaattgatatacacattaaggctgtctacctatcattg 2835175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 3620885 - 3620949
Alignment:
Q  12 gcacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    |||||||||| | ||||| ||||||||||||||  ||| |  ||||||||| |||||||||||||    
T  3620885 gcacagaccacatatttgattaactgaaattttcgaaaatagtacaaagcgatgtacacattaag 3620949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 3785944 - 3785881
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||||| ||||||||||||||||||  | |||| ||||||| |||||||||||||||    
T  3785944 cacagaccataaaattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaag 3785881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 9710850 - 9710908
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    |||||| ||||||||||||||||||||||| |||| ||||||| |||||||| ||||||    
T  9710850 accatatatttggttaactgaaatttttcagagtggtacaaaggggtgtacatattaag 9710908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 5342008 - 5342089
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatta-agatgtctacctatcattg 93  Q
    ||||||||||| ||| | ||||||||||||||||| |||  ||||||| ||||||| |||||  ||||||||||||||||||    
T  5342008 cacagaccatatattcgattaactgaaatttttcagagtcgtacaaaggggtgtacgcattagggatgtctacctatcattg 5342089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 19280329 - 19280409
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcatt 92  Q
    ||||||||||| ||||| |||||| ||| |||||| |||| ||||||  |||||||||||||| | |||||||||||||||    
T  19280329 cacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgtctacctatcatt 19280409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 22432462 - 22432526
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga 77  Q
    ||||||||||| ||||| || ||| ||||||||||||||| ||||||  ||||||||||||||||    
T  22432462 cacagaccatatatttgatttactcaaatttttcaaagtgctacaaaagggtgtacacattaaga 22432526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 3823633 - 3823570
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| | ||||||||||||||||||  | |||| ||||||| |||||||||||||||    
T  3823633 cacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaag 3823570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 26308617 - 26308571
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaa 59  Q
    |||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  26308617 cacaaaccatatatttagttaactgatatttttcaaagtgatacaaa 26308571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 27335357 - 27335291
Alignment:
Q  27 ttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatcatt 92  Q
    |||||||||| ||| |||||| | || ||||||| |||||||||||| ||||||| |||||||||||    
T  27335357 ttggttaactcaaaattttcagaatggtacaaaggggtgtacacattaaagatgtttacctatcatt 27335291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 31545751 - 31545829
Alignment:
Q  16 agaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacctatcattg 93  Q
    |||||||| ||| ||||| ||||||||||||| |||||||||||  | |||||| ||||| | ||||||||||| ||||    
T  31545751 agaccatatattaggttacctgaaatttttcagagtgatacaaaaagatgtacatattaaaattgtctacctataattg 31545829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 39126297 - 39126359
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa 75  Q
    |||||| |||| |||||||||||| |||||||||| | | ||||||||  |||||||||||||    
T  39126297 cacagatcatatatttggttaacttaaatttttcagaataatacaaagaagtgtacacattaa 39126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 11501402 - 11501483
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag-atgtctacctatcattg 93  Q
    |||||| |||| |||||||||||| |||||||  |||||| || ||||  ||||||||||||||  |||| |||||||||||    
T  11501402 cacagatcatatatttggttaacttaaattttctaaagtggtataaaggagtgtacacattaagtgtgtcaacctatcattg 11501483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 31596777 - 31596704
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaaga-tgtctacc 85  Q
    |||| |||||| ||||| ||||||| |||||||||||||| ||||||| |||||||| ||||||| ||||||||    
T  31596777 cacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtctacc 31596704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 38606805 - 38606724
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaa-gatgtctacctatcattg 93  Q
    |||| |||||| |||| |||||||||||||||||| |||| ||||||| ||| || | ||||| ||||||||||||||||||    
T  38606805 cacataccatatatttagttaactgaaatttttcagagtggtacaaaggggtctaaagattaaggatgtctacctatcattg 38606724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 5322089 - 5322148
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacat 72  Q
    ||||||||||| |||||||||| |||||||||| | ||||||||||||  ||||||||||    
T  5322089 cacagaccatatatttggttaattgaaatttttgagagtgatacaaaggagtgtacacat 5322148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 24576187 - 24576248
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatta 74  Q
    ||||||||||| |||||||||| |||||||||  | |||| ||||||| |||||||||||||    
T  24576187 cacagaccatatatttggttaattgaaattttcgagagtggtacaaaggggtgtacacatta 24576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 28700117 - 28700045
Alignment:
Q  18 accataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacatt-aagatgtctacctatc 89  Q
    |||||| |||| |||||||||||||||| | | |||||||||  | |||||||||| |||||||| |||||||    
T  28700117 accatatatttagttaactgaaattttttagaatgatacaaaatgatgtacacattaaagatgtcaacctatc 28700045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 336 - 399
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaaagtgatacaaagcggtgtacacattaag 76  Q
    ||||||||||| |||||||||||||||| |||||| |||| ||||||| | |||||| ||||||    
T  336 cacagaccatatatttggttaactgaaaattttcagagtggtacaaagagatgtacaaattaag 399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 186 - 104
Alignment:
Q  13 cacagaccataaatttggttaactgaaatttttcaa-agtgatacaaagcggtgtacacatt-aagatgtctacctatcattg 93  Q
    ||||| ||||| |||||||||||||||||||||||| |||| ||||||    |||||||||| ||||||||||||| ||||||    
T  186 cacagtccatatatttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacattaaagatgtctacctgtcattg 104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University