View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_high_9 (Length: 404)
Name: NF17689_high_9
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Original strand, 2529760 - 2530137
Alignment:
| Q |
13 |
gttcactgataagtttcattcctttggtgaatttttgcattggtaataatgtatcggttggatgatcaaaactttgccaaatcacattactatcatttcc |
112 |
Q |
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| T |
2529760 |
gttcactgataagtttcattcctttggtgaatttttgcattggtaataatgtatctgttggatgatcaaaactttgccaaatcacattactatcatttcc |
2529859 |
T |
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| Q |
113 |
aagcaaaactaaatttccattgtcttgtaattccattgaagaaactttcatgccacttgtctttgttgaccaaactgaannnnnnnnnnnnngtaaaaaa |
212 |
Q |
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| T |
2529860 |
aagcaaaactaaatttccattgtcttgtaattccattgaagaaactttcatgccacttgtatttgttgaccaaactgaattttttcctttttgtaaaaaa |
2529959 |
T |
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| Q |
213 |
gcattaccctcttcatcaaacacaaacttatcagaattagaaacaggagattctctatttgcagtccaaacaacttttgtgctatccatgtggactattg |
312 |
Q |
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| T |
2529960 |
gcattaccctcttcatcaaacacaaacttatcagaattagaaacaggagattctctatttgcagtccaaacaacttttgtgctatccatgtggactattg |
2530059 |
T |
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| Q |
313 |
caagtagaaacaatgtgttgtcatttgaagttgtgataaagccaaaaccaaattcttgtttgtttgacacaagaaatt |
390 |
Q |
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| T |
2530060 |
caagtagaaacaatgtgttgtcatttgaagttgtgataaagccaaaaccaaattcttgtttgtttgacacaagaaatt |
2530137 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 49462370 - 49462293
Alignment:
| Q |
205 |
gtaaaaaagcattaccctcttcatcaaacacaaacttatcagaattagaaacaggagattctctatttgcagtccaaa |
282 |
Q |
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| T |
49462370 |
gtaaaaaagcattaccctttttatcaaagacaaaattatcagaattagaaactggttttcctctattagcagtccaaa |
49462293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 31027494 - 31027455
Alignment:
| Q |
111 |
ccaagcaaaactaaatttccattgtcttgtaattccattg |
150 |
Q |
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| T |
31027494 |
ccaagcaaaaccaaatttccattgtcttgcaattccattg |
31027455 |
T |
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