View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_low_1 (Length: 775)
Name: NF17689_low_1
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 651; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 12 - 764
Target Start/End: Complemental strand, 49438965 - 49438206
Alignment:
| Q |
12 |
aagaatatggagagtattacgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgcactccattctgctcaagctagattc |
111 |
Q |
| |
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| T |
49438965 |
aagaatatggagagtattgcgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgtactccattctgctcaagctagattc |
49438866 |
T |
|
| Q |
112 |
catcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgaccatgttgtacaccat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49438865 |
catcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgatcatgttgtacaccat |
49438766 |
T |
|
| Q |
212 |
ggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtgctcgacttgtttt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438765 |
ggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtgctcgacttgtttt |
49438666 |
T |
|
| Q |
312 |
catttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttcgtgttgct |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49438665 |
catttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttagtgttgct |
49438566 |
T |
|
| Q |
412 |
tctggctggatgtccaattcttgtagatttgcatacagaacatttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagctta |
511 |
Q |
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| T |
49438565 |
tctggctggatgtccaattcttgaagatttgcatacagaacatttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagctta |
49438466 |
T |
|
| Q |
512 |
agcaagttgactaaagcagaaatgccttacacttattgtcattttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggttt |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438465 |
agcaagttgactaaagcagaaatgccttacacttattgtcattttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggttt |
49438366 |
T |
|
| Q |
612 |
gaaatttattattgctatatgaatacactgatggtgaaatgtgttgannnnnnnnnnnnnnnnnnnnngaaaatgttgaccttatttc-------tgatg |
704 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
49438365 |
gaaatttattattgctatatgaatacactgatggtgaaatgtgttgattttgtttttgcttttcttttgaaaatgttgaccttatttctgatgagtgatg |
49438266 |
T |
|
| Q |
705 |
gtatatatttctatgttgtttacttgtttttagatgtatcgaagttttgatgagattcct |
764 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438265 |
gtatatatttctatgttgtttacttgtttttagatgtatcgaagttttgatgagattcct |
49438206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 69 - 448
Target Start/End: Complemental strand, 49435065 - 49434686
Alignment:
| Q |
69 |
gctttaacgagtttgtgcactccattctgctcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtgg |
168 |
Q |
| |
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|||| |||||||||||| |||| || || ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| || || ||| |
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| T |
49435065 |
gcttcaacgagtttgtgtactctgttttgttcaagctagattccatcaagagtttctggctcaaggttggatataatggttctgatcttgcataccttgg |
49434966 |
T |
|
| Q |
169 |
ctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgtt |
268 |
Q |
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|||||| || || || |||||| | ||||||||||| | | ||||||||||| ||| |||| || |||| || | ||||||||||||||||||| |
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| T |
49434965 |
ctttcctagcgtagttaaatggctcaaccatgttgtaaaacgcggtgttgagagaattcttctcactcttttctctggcgttgatatgaaattgcccgtt |
49434866 |
T |
|
| Q |
269 |
agcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgct |
368 |
Q |
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|||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| | |||||| ||||||||||| |||||||||||||||||| | |
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| T |
49434865 |
agcattttgaactgcaaaacccttgtggagctccacttgttttcatttaatgtgaaaggtttttcctctgttagacttccctccctcaaaatcctttatt |
49434766 |
T |
|
| Q |
369 |
tagaactttgttcatttctaaatgatcgagatttcgtgttgcttctggctggatgtccaattcttgtagatttgcataca |
448 |
Q |
| |
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||||||||||||| |||||||||| | ||||||| || |||||| ||||||||||||||||||| | |||||| |||||| |
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| T |
49434765 |
tagaactttgttcgtttctaaatgctagagatttagtattgcttttggctggatgtccaattctagaagatttacataca |
49434686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 533 - 636
Target Start/End: Original strand, 49415378 - 49415481
Alignment:
| Q |
533 |
atgccttacacttattgtcattttccgttgaaagcacttcataatgtggagaaactgcacatagaactaaataaggtttgaaatttattattgctatatg |
632 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
49415378 |
atgccttccactttttgtcattttccattgaaagcacttcataatgtgaaggaactgtacatagaaataaatcaggtttgaaatttattattgctatatg |
49415477 |
T |
|
| Q |
633 |
aata |
636 |
Q |
| |
|
|||| |
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| T |
49415478 |
aata |
49415481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 49415223 - 49415269
Alignment:
| Q |
346 |
cccctccctcaaaatccttcgcttagaactttgttcatttctaaatg |
392 |
Q |
| |
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||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
49415223 |
cccctccctcaaaatccttcgtttagaacattgtatatttctaaatg |
49415269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 764
Target Start/End: Complemental strand, 49426928 - 49426853
Alignment:
| Q |
687 |
ttgaccttatttctgatggtatatatttctatgttgtttacttgtttttagatgtatcgaagttttgatgagattcct |
764 |
Q |
| |
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|||||||||||| | |||||||| |||| |||||||||| ||| ||||| |||||||| ||| ||||||||||||| |
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| T |
49426928 |
ttgaccttatttttcatggtatacctttccatgttgtttatttg--tttaggtgtatcgaggttgtgatgagattcct |
49426853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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