View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17689_low_11 (Length: 388)
Name: NF17689_low_11
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_11 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 379
Target Start/End: Complemental strand, 26652436 - 26652085
Alignment:
| Q |
22 |
ctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatggtctccaatctccatagctgacaaagagtgccatgaatgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
26652436 |
ctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatggtctcca-------tagctgacaaagagtgccatggatgt |
26652344 |
T |
|
| Q |
122 |
cactcatacaacatgagagacaacaatacattttgtttgtgccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgag |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26652343 |
cactcatacaacacgagagacaacaatacattttgtttgtgccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgag |
26652244 |
T |
|
| Q |
222 |
tggaactgcaaacatttgaccgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagtctatct |
321 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26652243 |
cggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcctcacaatcgagccggttatgaagtctatct |
26652144 |
T |
|
| Q |
322 |
tgtaagagtcccaaaccaaacaca-nnnnnnnggcaatgatgtgaaccataatctctgc |
379 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26652143 |
tgtaagagtcccaaaccaaacacattttttttggcaatgatgtgaaccataatctctgc |
26652085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 379
Target Start/End: Complemental strand, 26758404 - 26758053
Alignment:
| Q |
22 |
ctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatggtctccaatctccatagctgacaaagagtgccatgaatgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
26758404 |
ctgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatggtctcca-------tagctgacaaagagtgccatggatgt |
26758312 |
T |
|
| Q |
122 |
cactcatacaacatgagagacaacaatacattttgtttgtgccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgag |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26758311 |
cactcatacaacacgagagacaacaatacattttgtttgtgccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgag |
26758212 |
T |
|
| Q |
222 |
tggaactgcaaacatttgaccgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagtctatct |
321 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26758211 |
cggaactgcgaacatttgactgagatcaaaagtttgagggatcacatcaaggaatgtccatagggaatcctcacaatcgagccggttatgaagtctatct |
26758112 |
T |
|
| Q |
322 |
tgtaagagtcccaaaccaaacaca-nnnnnnnggcaatgatgtgaaccataatctctgc |
379 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26758111 |
tgtaagagtcccaaaccaaacacattttttttggcaatgatgtgaaccataatctctgc |
26758053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 163 - 345
Target Start/End: Original strand, 27421105 - 27421287
Alignment:
| Q |
163 |
ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagtggaactgcaaacatttgaccgagatcaaaagtttgaggga |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| || |||| |||| ||| | |||||||||||| ||| ||||||||||||| |
|
|
| T |
27421105 |
ccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtcagtgagcagaaaggtgaacatttgaccgggattgaaagtttgaggga |
27421204 |
T |
|
| Q |
263 |
tcacatcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagtctatcttgtaagagtcccaaaccaaacaca |
345 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||| |
|
|
| T |
27421205 |
tcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtctccaaccatacaca |
27421287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 31289975 - 31289892
Alignment:
| Q |
165 |
agggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagtggaactgcaaacatttgaccgagatc |
248 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
31289975 |
agggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatc |
31289892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 31289885 - 31289817
Alignment:
| Q |
277 |
gtccatagggaatcctcacaatcgagccggttaggaagtctatcttgtaagagtcccaaaccaaacaca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || || ||||||| |
|
|
| T |
31289885 |
gtccatagggaatcctcacaatcgagccggttaggaagtctatctcgtaaaagtctcatactaaacaca |
31289817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 290
Target Start/End: Complemental strand, 26632842 - 26632715
Alignment:
| Q |
163 |
ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagtggaactgcaaacatttgaccgagatcaaaagtttgaggga |
262 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| ||| ||| ||| ||| |||||| | || ||||||||| ||| ||| |||| ||||| |
|
|
| T |
26632842 |
ccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttgaccgggatgaaatgtttaaggga |
26632743 |
T |
|
| Q |
263 |
tcacatcaaggaatgtccatagggaatc |
290 |
Q |
| |
|
| |||||||||||||||||| |||| |
|
|
| T |
26632742 |
ttgggtcaaggaatgtccataggaaatc |
26632715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 290
Target Start/End: Complemental strand, 26738818 - 26738691
Alignment:
| Q |
163 |
ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagtggaactgcaaacatttgaccgagatcaaaagtttgaggga |
262 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| ||| ||| ||| ||| |||||| | || ||||||||| ||| ||| |||| ||||| |
|
|
| T |
26738818 |
ccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttgaccgggatgaaatgtttaaggga |
26738719 |
T |
|
| Q |
263 |
tcacatcaaggaatgtccatagggaatc |
290 |
Q |
| |
|
| |||||||||||||||||| |||| |
|
|
| T |
26738718 |
ttgggtcaaggaatgtccataggaaatc |
26738691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 27420885 - 27420943
Alignment:
| Q |
23 |
tgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatg |
81 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27420885 |
tgtgatcacgaaaagaacagtgttcatccatttcctactcttatttcctatatgcaatg |
27420943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 163 - 345
Target Start/End: Complemental strand, 66258 - 66076
Alignment:
| Q |
163 |
ccagggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagtggaactgcaaacatttgaccgagatcaaaagtttgaggga |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| || |||| |||| ||| | |||||||||||| ||| ||||||||||||| |
|
|
| T |
66258 |
ccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtcagtgagcagaaaggtgaacatttgaccgggattgaaagtttgaggga |
66159 |
T |
|
| Q |
263 |
tcacatcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagtctatcttgtaagagtcccaaaccaaacaca |
345 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||| |
|
|
| T |
66158 |
tcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcctatcttgtaagagtctccaaccatacaca |
66076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 66478 - 66420
Alignment:
| Q |
23 |
tgtgaccaccaaaagaacagtattcatccatttcctactcttatttcctatttgcaatg |
81 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
66478 |
tgtgatcacgaaaagaacagtgttcatccatttcctactcttatttcctatatgcaatg |
66420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University