View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17689_low_14 (Length: 332)
Name: NF17689_low_14
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 3574588 - 3574382
Alignment:
| Q |
29 |
aaaaaactcatatgcatgtataatactgtgtt-tcatattaatatacaagagaacccacgattttcactcacaatagaaaatgaataacacttgaa-tat |
126 |
Q |
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|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
3574588 |
aaaaaactcatatgcatgtataatattgtgttatcatattaatatacaagagaacccacgattttcactcacaataaaaaatgaataacacttgaaatat |
3574489 |
T |
|
| Q |
127 |
atcatacttatttctaattctaattaacattgcaagctaatctccaagaccctacccctactccgtttgggagtcattttgactttaattgccgaactta |
226 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3574488 |
atcatacttatttctaattctaattaacattgcaagctaatctccaaaaccctaaccctactccgtttgggagtcattttgactttaattgccgaactta |
3574389 |
T |
|
| Q |
227 |
atagtca |
233 |
Q |
| |
|
||||||| |
|
|
| T |
3574388 |
atagtca |
3574382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 3586938 - 3586895
Alignment:
| Q |
72 |
tacaagagaacccacgattttcactcacaatagaaaatgaataa |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3586938 |
tacaagagaacccacaattttcactcacaatagaaaatgaataa |
3586895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 16629397 - 16629359
Alignment:
| Q |
279 |
gctacttaagtgtttgaactacatttgatattgatgcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16629397 |
gctacttaagtgtttgaactacatttgatattgatgcat |
16629359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 16638278 - 16638240
Alignment:
| Q |
279 |
gctacttaagtgtttgaactacatttgatattgatgcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16638278 |
gctacttaagtgtttgaactacatttgatattgatgcat |
16638240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 3574308 - 3574274
Alignment:
| Q |
234 |
tctattggctttcaacgattcaactccactagatc |
268 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
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|
| T |
3574308 |
tctattggctttcaacaattcaactccactagatc |
3574274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 38612053 - 38612017
Alignment:
| Q |
125 |
atatcatacttatttctaattctaattaacattgcaa |
161 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38612053 |
atatcatacttatttctaatcctaattaacattgcaa |
38612017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 29861944 - 29861911
Alignment:
| Q |
128 |
tcatacttatttctaattctaattaacattgcaa |
161 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
29861944 |
tcatacttatttctaatcctaattaacattgcaa |
29861911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 44546019 - 44546052
Alignment:
| Q |
128 |
tcatacttatttctaattctaattaacattgcaa |
161 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
44546019 |
tcatacttatttctaatcctaattaacattgcaa |
44546052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 31942656 - 31942619
Alignment:
| Q |
124 |
tatatcatacttatttctaattctaattaacattgcaa |
161 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31942656 |
tatatcatacttatttctaatcataattaacattgcaa |
31942619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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