View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17689_low_20 (Length: 266)

Name: NF17689_low_20
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17689_low_20
NF17689_low_20
[»] chr5 (2 HSPs)
chr5 (9-254)||(41485095-41485332)
chr5 (14-232)||(408062-408272)
[»] chr4 (4 HSPs)
chr4 (9-214)||(16422416-16422620)
chr4 (24-95)||(44037205-44037276)
chr4 (14-98)||(6019347-6019429)
chr4 (9-79)||(41389213-41389283)
[»] chr2 (3 HSPs)
chr2 (150-227)||(41454376-41454453)
chr2 (9-80)||(41454863-41454934)
chr2 (9-227)||(13693771-13693983)
[»] chr8 (2 HSPs)
chr8 (8-227)||(9035069-9035281)
chr8 (13-78)||(3372190-3372255)
[»] chr6 (4 HSPs)
chr6 (13-78)||(16358836-16358901)
chr6 (13-78)||(18849537-18849602)
chr6 (52-98)||(26141630-26141676)
chr6 (47-96)||(25509531-25509580)
[»] chr3 (1 HSPs)
chr3 (31-98)||(26641424-26641491)
[»] scaffold0025 (1 HSPs)
scaffold0025 (42-108)||(36847-36913)
[»] chr7 (3 HSPs)
chr7 (13-95)||(33164334-33164416)
chr7 (150-227)||(28195165-28195242)
chr7 (9-65)||(28195303-28195359)
[»] scaffold0215 (1 HSPs)
scaffold0215 (13-78)||(24844-24909)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 41485095 - 41485332
Alignment:
Q  9 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggaga 108  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41485095 acaatagaagtttacaaagtcaaaatttaaagttggttacaataacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggaga 41485194  T
Q  109 gtgccatagatttcattcagagtacaatatatataatgaggaaaaatgaagtgccaccaataccgtacgcgtacccgatacggatacttcatcattttac 208  Q
    ||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  41485195 gtgccatagatttcattcagagtaca------ataatgaggaaaattgaagtgccaccaataccgtacgcgtacccggtacgggtacttcatcattttac 41485288  T
Q  209 aagtacacatgctttagagtacactcaagcatataattctctgttc 254  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  41485289 aagtacacatgctttagagt--actcaagcatataattctctgttc 41485332  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 408272 - 408062
Alignment:
Q  14 agaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggagagtgcc 113  Q
    |||| |||| |||||| ||||||| ||| |||||||  ||||||||||||||| ||||||||||||| || |||||  ||||||| || | ||||  |||    
T  408272 agaagtttaaaaagtccaaatttagagtcggttacaacaacaaagaaactcaaacgcacaaataatagtatattgt--tattaatgtataagagaaagcc 408175  T
Q  114 atagatttcattcagagtacaatatatataatgaggaaaaatgaagtgccaccaataccgtacgcgtacccgatacggatacttcatcattttacaagta 213  Q
    | | |||||| ||| | |||||||      ||||| ||||||| ||| |||| | ||||||||||||||||  ||| | ||||||| | |||||||||||    
T  408174 acaaatttcactcacaatacaata------atgagcaaaaatggagtaccacgagtaccgtacgcgtacccagtaccggtacttcaccgttttacaagta 408081  T
Q  214 cacatgctttagagtacac 232  Q
    | ||||||| |||| ||||    
T  408080 cccatgcttcagaggacac 408062  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 16422416 - 16422620
Alignment:
Q  9 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaatt-----gtcatattaatataaa 103  Q
    ||||||||| |||| |||||| ||||||| ||||||||||||||||||| ||||| ||   |||||||||||||| |||     ||||||||| | || |    
T  16422416 acaatagaagtttaaaaagtcaaaatttagagttggttacagtaacaaataaacttaaatacacaaataatattatattatattgtcatattagtgtata 16422515  T
Q  104 ggagagtgccatagatttcattcagagtacaatatatataatgaggaaaaatgaagtgccaccaataccgtacgcgtacccgatacggatacttcatcat 203  Q
     |||| || |||| |||||| ||| | |||||||      ||||| ||||||||||| |||| | ||| ||||||||| ||||||||| ||||||||| |    
T  16422516 agagaatgtcataaatttcactcacaatacaata------atgagaaaaaatgaagtaccacgagtactgtacgcgtatccgatacgggtacttcatcgt 16422609  T
Q  204 tttacaagtac 214  Q
    |||||||||||    
T  16422610 tttacaagtac 16422620  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 44037276 - 44037205
Alignment:
Q  24 aaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatatt 95  Q
    |||||||||||||| |||||||||||  ||||||||||||||| | ||||| |||||||  |||||||||||    
T  44037276 aaagtcgaaatttagagttggttacaacaacaaagaaactcaaacacacaagtaatattgtattgtcatatt 44037205  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 6019347 - 6019429
Alignment:
Q  14 agaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaat 98  Q
    ||||||||| |||||||||||||| |||||||||||  |||  |||||||||| |||| |||||||| || ||||| ||||||||    
T  6019347 agaaatttaaaaagtcgaaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaat 6019429  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 41389213 - 41389283
Alignment:
Q  9 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataat 79  Q
    |||||| ||||||| |||||||||| | | ||||||||| |  ||||||||||||||| |||| |||||||    
T  41389213 acaataaaaatttaaaaagtcgaaactaagagttggttataacaacaaagaaactcaaacgcataaataat 41389283  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 41454453 - 41454376
Alignment:
Q  150 aaaaatgaagtgccaccaataccgtacgcgtacccgatacggatacttcatcattttacaagtacacatgctttagag 227  Q
    ||||||||||| |||| | ||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  41454453 aaaaatgaagtaccacgagtaccgtacgcgtacccgatacgggtacttcatcgttttacaagtacccatgctttagag 41454376  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 41454934 - 41454863
Alignment:
Q  9 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataata 80  Q
    ||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||||    
T  41454934 acaatagaagtttaaaaagtcgaaatttagagttggttacaataacaaagaaactcaaaggcacaaataata 41454863  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 13693771 - 13693983
Alignment:
Q  9 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggaga 108  Q
    |||||||||  ||| |||||| ||||||| |||||||||||  ||||||||||| ||| ||| ||||||| |||| |||||| ||||||| || ||||||    
T  13693771 acaatagaagattaaaaagtcaaaatttagagttggttacaacaacaaagaaacgcaaacgcgcaaataacattatattgtcctattaatgtataggaga 13693870  T
Q  109 gtgccatagatttcattcagagtacaatatatataatgaggaaaaatgaagtgccaccaataccgtacgcgtacccgatacggatacttcatcattttac 208  Q
      |||||| |||||| ||     |||||| |||||||||  ||||||  |||  ||  | |||||||  |||||||||||||| ||||||| | ||||||    
T  13693871 aagccataaatttcactc-----acaata-atataatgaacaaaaatagagtatcaagagtaccgtatccgtacccgatacgggtacttcaccgttttac 13693964  T
Q  209 aagtacacatgctttagag 227  Q
    |||||  ||||||| ||||    
T  13693965 aagtatccatgcttcagag 13693983  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 9035281 - 9035069
Alignment:
Q  8 tacaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggag 107  Q
    |||| ||||| ||||  ||||||||||||| |||||||||||  ||||||||||| ||| |  |||||||| |||| |||||||||||||| |  | |||    
T  9035281 tacattagaagtttaagaagtcgaaatttagagttggttacaacaacaaagaaacgcaaacatacaaataacattatattgtcatattaatgtgtatgag 9035182  T
Q  108 agtgccatagatttcattcagagtacaatatatataatgaggaaaaatgaagtgccaccaataccgtacgcgtacccgatacggatacttcatcatttta 207  Q
    |   ||| | |||||||||| |  ||||||      ||||| |||||| |||| |||| |||||||||| | || ||||||| | |||||||||||||||    
T  9035181 aaaaccacaaatttcattcacaa-acaata------atgagcaaaaattaagtaccacgaataccgtacccatatccgatacaggtacttcatcatttta 9035089  T
Q  208 caagtacacatgctttagag 227  Q
    ||||||| ||| ||| ||||    
T  9035088 caagtacccatacttcagag 9035069  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 3372190 - 3372255
Alignment:
Q  13 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 78  Q
    ||||| |||| ||| |||||||||| |||||||||||  || ||||||||||||  ||||||||||    
T  3372190 tagaagtttaaaaattcgaaatttagagttggttacaacaataaagaaactcaaatgcacaaataa 3372255  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 16358836 - 16358901
Alignment:
Q  13 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 78  Q
    ||||| |||| |||||||||||||| |||||||||||  ||||||||||||||| |||||||||||    
T  16358836 tagaagtttaaaaagtcgaaatttagagttggttacaacaacaaagaaactcaaacgcacaaataa 16358901  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 18849602 - 18849537
Alignment:
Q  13 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 78  Q
    ||||| |||| ||| |||||||||| |||||||||||  |||||||||||||||  ||||||||||    
T  18849602 tagaagtttaaaaattcgaaatttagagttggttacaacaacaaagaaactcaaatgcacaaataa 18849537  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 26141630 - 26141676
Alignment:
Q  52 aacaaagaaactcaagcgcacaaataatattaaattgtcatattaat 98  Q
    |||||||||||||||  ||||||||||||||| | ||||||||||||    
T  26141630 aacaaagaaactcaaatgcacaaataatattatagtgtcatattaat 26141676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 25509531 - 25509580
Alignment:
Q  47 acagtaacaaagaaactcaagcgcacaaataatattaaattgtcatatta 96  Q
    |||| |||||||||||||||  ||||||||||||||| | ||||||||||    
T  25509531 acagcaacaaagaaactcaaatgcacaaataatattacagtgtcatatta 25509580  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 26641491 - 26641424
Alignment:
Q  31 aaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaat 98  Q
    ||||||| |||||||||||  |||||| |||||||| ||||||||||| |||| |||| |||||||||    
T  26641491 aaatttagagttggttacaacaacaaaaaaactcaaacgcacaaataacattatattgccatattaat 26641424  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 36913 - 36847
Alignment:
Q  42 tggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggaga 108  Q
    ||||||||  ||||||||||||||| ||||||||||| |||| ||| |||||||||| || ||||||    
T  36913 tggttacaacaacaaagaaactcaaacgcacaaataacattatattatcatattaatgtataggaga 36847  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 33164334 - 33164416
Alignment:
Q  13 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataatattaaattgtcatatt 95  Q
    ||||| |||| |||||||||||||| |||||||||||  ||||| ||||||||| | ||||| |||||||   ||||||||||    
T  33164334 tagaagtttaaaaagtcgaaatttagagttggttacaacaacaacgaaactcaaacacacaagtaatattgttttgtcatatt 33164416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 28195242 - 28195165
Alignment:
Q  150 aaaaatgaagtgccaccaataccgtacgcgtacccgatacggatacttcatcattttacaagtacacatgctttagag 227  Q
    ||||||||||||| || | ||||||| ||||||||| ||||  ||||||| | |||||||||||| ||||||| ||||    
T  28195242 aaaaatgaagtgctacgagtaccgtatgcgtacccggtacgagtacttcacctttttacaagtacccatgcttcagag 28195165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 28195359 - 28195303
Alignment:
Q  9 acaatagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactca 65  Q
    ||||||||| |||| |||||||||| ||| |||||||||||  |||||| |||||||    
T  28195359 acaatagaagtttaaaaagtcgaaaattagagttggttacaacaacaaaaaaactca 28195303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 24844 - 24909
Alignment:
Q  13 tagaaatttacaaagtcgaaatttaaagttggttacagtaacaaagaaactcaagcgcacaaataa 78  Q
    ||||| |||| ||| |||||||||| |||||||||||  ||||||||||||||  |||||||||||    
T  24844 tagaagtttaaaaattcgaaatttagagttggttacaacaacaaagaaactcacacgcacaaataa 24909  T

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