View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_low_21 (Length: 255)
Name: NF17689_low_21
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_21 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 1739495 - 1739259
Alignment:
| Q |
19 |
ggacaagagatggatataaagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaacggttatgtatctatatatctaa |
118 |
Q |
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| T |
1739495 |
ggacaagagatggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtatctatatatctaa |
1739396 |
T |
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| Q |
119 |
acatattctaaaaaatacaaataactccataaagagtnnnnnnntattggttttcttgatttctcagttcttttatgacacatgtaattgatttgtcaat |
218 |
Q |
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| T |
1739395 |
acatattctaaaaaatacaaataactccataaagagtaaaaaaatattggttttcttgatttctcagttcttttatgacacatgtaattgatttgtcaat |
1739296 |
T |
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| Q |
219 |
tcnnnnnnnatattgatttctcaagaaaataaaaaca |
255 |
Q |
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| T |
1739295 |
tctttttttatattgatttctcaagaaaataaaaaca |
1739259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 1718025 - 1717925
Alignment:
| Q |
19 |
ggacaagagatggatataaagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaacggttatgtatctatatatctaa |
118 |
Q |
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| T |
1718025 |
ggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaa |
1717926 |
T |
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| Q |
119 |
a |
119 |
Q |
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| T |
1717925 |
a |
1717925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 1754957 - 1754878
Alignment:
| Q |
21 |
acaagagatggatataaagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaacggtt |
100 |
Q |
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| T |
1754957 |
acaagagatggatttatagaatggggtgaatcatacatacctcagacagtctctgtcatagatttcctagcaaaaaggtt |
1754878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 1749342 - 1749254
Alignment:
| Q |
21 |
acaagagatggatataaagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaacggttatgtatcta |
109 |
Q |
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|||||||||||||||| |||||||| |||||| ||||| || |||||||| |||| || || ||||||||| || |||| |||||||| |
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| T |
1749342 |
acaagagatggatatacagaatggggtgattcttacatacctcagacagtagctgtgattgatttcttagcacaaaggttttgtatcta |
1749254 |
T |
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