View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_low_24 (Length: 236)
Name: NF17689_low_24
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 18987631 - 18987425
Alignment:
| Q |
26 |
aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgattgttannnnnnnatttatctatc |
125 |
Q |
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| T |
18987631 |
aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgatttttatttttttatttatctatc |
18987532 |
T |
|
| Q |
126 |
tagaataaccattttgcccttttcttcnnnnnnnntattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattgttcat |
225 |
Q |
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| T |
18987531 |
tagaataaccattttgcccttttcttcaaaaaaaatattcatagatgtctgccacattgtaaattttaactctcaaacatttatcaacaacattgttcat |
18987432 |
T |
|
| Q |
226 |
ctcactc |
232 |
Q |
| |
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|| |||| |
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|
| T |
18987431 |
ctgactc |
18987425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 19002258 - 19002052
Alignment:
| Q |
26 |
aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgattgttannnnnnnatttatctatc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
19002258 |
aaaggaactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttattttgtgatttttatttttttatttatctatc |
19002159 |
T |
|
| Q |
126 |
tagaataaccattttgcccttttcttcnnnnnnnntattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattgttcat |
225 |
Q |
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| T |
19002158 |
tagaataaccattttgcccttttcttcaaaaaaaatattcatagatgtctgccacattgtaaattttaactctcaaacatttatcaacaacattgttcat |
19002059 |
T |
|
| Q |
226 |
ctcactc |
232 |
Q |
| |
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|| |||| |
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| T |
19002058 |
ctgactc |
19002052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 18987464 - 18987398
Alignment:
| Q |
31 |
aactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttatttt |
97 |
Q |
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|
||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18987464 |
aactctcaaacatttatcaacaacattgttcatctgactcagcgagaattccatggatatttatttt |
18987398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 19002091 - 19002025
Alignment:
| Q |
31 |
aactctccaacatttatcaacaacgttgtccatctgactcagcgagaattccatggatatttatttt |
97 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19002091 |
aactctcaaacatttatcaacaacattgttcatctgactcagcgagaattccatggatatttatttt |
19002025 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 18987683 - 18987637
Alignment:
| Q |
161 |
tattcatagatgtctgccacattgtaaattttatctctccaacattt |
207 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18987683 |
tattcatagatgtctgccacattgtaaattttaactctccaacattt |
18987637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 19002311 - 19002265
Alignment:
| Q |
161 |
tattcatagatgtctgccacattgtaaattttatctctccaacattt |
207 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19002311 |
tattcatagatgtctgccacattgtaaattttaactctccaacattt |
19002265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 18961565 - 18961530
Alignment:
| Q |
116 |
tttatctatctagaataaccattttgcccttttctt |
151 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
18961565 |
tttatttatctagaataaccattttgcccttttctt |
18961530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 1785741 - 1785807
Alignment:
| Q |
161 |
tattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattgttcatct |
227 |
Q |
| |
|
||||||||||||| |||||||||| || |||| |||||| | ||||||||||||||| ||||||| |
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| T |
1785741 |
tattcatagatgtttgccacattgacaaatttaactctccggcgtttatcaacaacatttttcatct |
1785807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 31522565 - 31522506
Alignment:
| Q |
161 |
tattcatagatgtctgccacattgtaaattttatctctccaacatttatcaacaacattg |
220 |
Q |
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|||||||||||| ||| |||||| |||||||| ||||| ||| |||||||||||||||| |
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| T |
31522565 |
tattcatagatggttgctacattgaaaattttaactctctaacgtttatcaacaacattg |
31522506 |
T |
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