View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17689_low_25 (Length: 226)
Name: NF17689_low_25
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17689_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 25484025 - 25483918
Alignment:
| Q |
13 |
attatactatgacttaaaacaaaacaacaacaagagaaatgctaggaacactctcctttaatactctatctaacactcactctaagagacttatttatga |
112 |
Q |
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| T |
25484025 |
attatactatgacttaaaacaaaacaacaa---gagaaatgctaagaacactctcctttaatactctatttaacactcactctaagagacttatttatga |
25483929 |
T |
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| Q |
113 |
ggattaagaat |
123 |
Q |
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| T |
25483928 |
ggattaagaat |
25483918 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 25483885 - 25483836
Alignment:
| Q |
156 |
gtggtatatgtggcatctccctcttttgtgaggtcttagagcattgacct |
205 |
Q |
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| T |
25483885 |
gtggtatatgtggcatctccctcttttgtgaggtcttagagcattgacct |
25483836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 30892296 - 30892243
Alignment:
| Q |
43 |
caagagaaatgctaggaacactctcctt-taatactctatctaacactcactct |
95 |
Q |
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| T |
30892296 |
caagagaaatgctaggaacactctctttctagcactctctctaacactcactct |
30892243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 37306398 - 37306451
Alignment:
| Q |
43 |
caagagaaatgctaggaacactctcctt-taatactctatctaacactcactct |
95 |
Q |
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|
| T |
37306398 |
caagagaaatgctaggaacactctctttctagcactctctctaacactcactct |
37306451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 5139963 - 5140015
Alignment:
| Q |
44 |
aagagaaatgctaggaacactctcctt-taatactctatctaacactcactct |
95 |
Q |
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|||||||||||||||||||||||| || || ||||| ||||||||||||||| |
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| T |
5139963 |
aagagaaatgctaggaacactctctttctagcactctctctaacactcactct |
5140015 |
T |
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