View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17689_low_26 (Length: 224)

Name: NF17689_low_26
Description: NF17689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17689_low_26
NF17689_low_26
[»] chr5 (20 HSPs)
chr5 (1-224)||(35922526-35922749)
chr5 (94-173)||(43262819-43262898)
chr5 (94-173)||(36169312-36169391)
chr5 (103-173)||(15221688-15221758)
chr5 (108-173)||(19621591-19621656)
chr5 (103-166)||(42034887-42034950)
chr5 (102-165)||(35922864-35922927)
chr5 (94-160)||(33958887-33958952)
chr5 (108-160)||(31189710-31189762)
chr5 (94-157)||(16095524-16095587)
chr5 (102-173)||(22169581-22169651)
chr5 (82-173)||(31189475-31189566)
chr5 (94-173)||(13312722-13312797)
chr5 (82-160)||(43461832-43461910)
chr5 (189-224)||(22169439-22169474)
chr5 (189-224)||(36169425-36169460)
chr5 (189-223)||(13312696-13312730)
chr5 (103-160)||(7156000-7156057)
chr5 (94-159)||(22169368-22169433)
chr5 (119-160)||(30704321-30704362)
[»] chr7 (24 HSPs)
chr7 (82-173)||(28805142-28805233)
chr7 (82-173)||(31303352-31303443)
chr7 (82-160)||(20556665-20556743)
chr7 (97-173)||(21589747-21589823)
chr7 (102-173)||(22032980-22033050)
chr7 (97-167)||(18312956-18313026)
chr7 (102-167)||(22033190-22033254)
chr7 (96-173)||(22740069-22740146)
chr7 (94-173)||(31303576-31303655)
chr7 (82-166)||(5174794-5174878)
chr7 (82-173)||(18312726-18312817)
chr7 (94-173)||(28804893-28804972)
chr7 (94-173)||(32964875-32964954)
chr7 (116-173)||(5083721-5083778)
chr7 (82-167)||(32964652-32964737)
chr7 (121-173)||(15958433-15958485)
chr7 (189-224)||(5083883-5083918)
chr7 (189-224)||(31303435-31303470)
chr7 (190-224)||(4290810-4290844)
chr7 (103-173)||(5083910-5083980)
chr7 (123-173)||(15958248-15958298)
chr7 (82-167)||(21548352-21548436)
chr7 (102-167)||(21548582-21548646)
chr7 (117-157)||(20556909-20556949)
[»] chr2 (13 HSPs)
chr2 (94-173)||(1400680-1400759)
chr2 (88-173)||(41212430-41212515)
chr2 (82-160)||(30906183-30906261)
chr2 (94-173)||(28527230-28527308)
chr2 (94-173)||(30905957-30906036)
chr2 (96-164)||(33667448-33667516)
chr2 (82-167)||(34175043-34175128)
chr2 (82-167)||(43900427-43900512)
chr2 (82-157)||(45305866-45305941)
chr2 (97-173)||(33667252-33667328)
chr2 (189-223)||(1400751-1400785)
chr2 (189-223)||(28527300-28527334)
chr2 (103-167)||(7378592-7378656)
[»] chr6 (30 HSPs)
chr6 (82-167)||(7915596-7915682)
chr6 (96-173)||(20084589-20084666)
chr6 (96-173)||(24386335-24386412)
chr6 (83-173)||(3222332-3222421)
chr6 (103-173)||(9068529-9068599)
chr6 (102-167)||(22608280-22608345)
chr6 (94-173)||(11108076-11108155)
chr6 (116-173)||(10304629-10304686)
chr6 (82-173)||(7706758-7706849)
chr6 (94-167)||(2430513-2430587)
chr6 (92-173)||(7915717-7915798)
chr6 (96-160)||(13767116-13767180)
chr6 (103-167)||(23595074-23595138)
chr6 (189-224)||(3222413-3222448)
chr6 (82-173)||(11108195-11108286)
chr6 (102-173)||(23595265-23595336)
chr6 (94-173)||(30056032-30056111)
chr6 (189-224)||(33815108-33815143)
chr6 (189-223)||(2430650-2430684)
chr6 (102-156)||(2835103-2835157)
chr6 (94-155)||(22608505-22608566)
chr6 (106-158)||(138826-138878)
chr6 (106-158)||(146847-146899)
chr6 (105-173)||(3222556-3222624)
chr6 (189-224)||(10304792-10304827)
chr6 (189-223)||(9068503-9068537)
chr6 (189-219)||(11108173-11108203)
chr6 (102-167)||(3620674-3620739)
chr6 (94-146)||(9474545-9474598)
chr6 (189-217)||(2365649-2365677)
[»] chr3 (29 HSPs)
chr3 (82-160)||(9710850-9710928)
chr3 (82-173)||(3785861-3785952)
chr3 (94-173)||(3823562-3823641)
chr3 (84-155)||(11509804-11509875)
chr3 (82-157)||(44080155-44080230)
chr3 (94-167)||(19280327-19280400)
chr3 (94-173)||(18733598-18733677)
chr3 (97-167)||(1705793-1705863)
chr3 (103-173)||(27335309-27335379)
chr3 (103-173)||(31545740-31545810)
chr3 (104-173)||(5342000-5342069)
chr3 (108-173)||(26308759-26308824)
chr3 (82-173)||(19280099-19280188)
chr3 (94-157)||(42637865-42637926)
chr3 (96-167)||(22432460-22432531)
chr3 (119-173)||(26308571-26308625)
chr3 (190-224)||(42638048-42638082)
chr3 (116-173)||(11501241-11501298)
chr3 (82-167)||(27040712-27040797)
chr3 (82-155)||(31545425-31545498)
chr3 (103-167)||(39126295-39126359)
chr3 (189-224)||(3823633-3823668)
chr3 (96-167)||(11501400-11501471)
chr3 (94-172)||(3823776-3823854)
chr3 (94-164)||(33488369-33488439)
chr3 (102-163)||(19624440-19624500)
chr3 (111-167)||(1705593-1705649)
chr3 (188-224)||(19280179-19280215)
chr3 (192-224)||(41571828-41571860)
[»] chr4 (25 HSPs)
chr4 (83-160)||(16583496-16583573)
chr4 (102-173)||(17633460-17633531)
chr4 (107-173)||(24669297-24669363)
chr4 (119-173)||(42908691-42908745)
chr4 (83-160)||(19596680-19596757)
chr4 (94-173)||(1966741-1966819)
chr4 (102-173)||(19596907-19596978)
chr4 (103-173)||(17633257-17633327)
chr4 (82-160)||(25007634-25007711)
chr4 (82-166)||(20871743-20871827)
chr4 (189-224)||(9809056-9809091)
chr4 (189-224)||(16583578-16583613)
chr4 (94-173)||(19746941-19747020)
chr4 (94-173)||(19792786-19792865)
chr4 (189-224)||(24669270-24669305)
chr4 (82-160)||(9810659-9810737)
chr4 (189-223)||(24669155-24669189)
chr4 (82-167)||(8740916-8741001)
chr4 (94-167)||(14351192-14351265)
chr4 (192-224)||(9810745-9810777)
chr4 (82-173)||(9808973-9809064)
chr4 (102-173)||(55666943-55667014)
chr4 (133-167)||(35544544-35544578)
chr4 (189-218)||(17633439-17633468)
chr4 (82-134)||(23048937-23048989)
[»] scaffold1126 (2 HSPs)
scaffold1126 (97-173)||(328-404)
scaffold1126 (103-159)||(123-180)
[»] chr1 (24 HSPs)
chr1 (103-167)||(5831662-5831726)
chr1 (82-173)||(5855006-5855096)
chr1 (94-173)||(34490312-34490391)
chr1 (102-167)||(13350902-13350967)
chr1 (94-173)||(29676992-29677071)
chr1 (84-165)||(517539-517623)
chr1 (119-173)||(5855228-5855282)
chr1 (103-173)||(13351009-13351079)
chr1 (102-145)||(34941719-34941762)
chr1 (92-167)||(38952037-38952112)
chr1 (96-158)||(34364369-34364431)
chr1 (102-160)||(29677206-29677264)
chr1 (82-167)||(5831432-5831516)
chr1 (120-173)||(25238600-25238653)
chr1 (103-160)||(28499663-28499720)
chr1 (94-167)||(34490100-34490173)
chr1 (189-221)||(38244801-38244833)
chr1 (189-223)||(9929870-9929904)
chr1 (131-173)||(29167754-29167796)
chr1 (194-224)||(29167901-29167931)
chr1 (100-173)||(2995919-2995991)
chr1 (138-167)||(9468064-9468093)
chr1 (82-167)||(34364132-34364217)
chr1 (102-162)||(42604128-42604188)
[»] chr8 (17 HSPs)
chr8 (82-173)||(31596694-31596785)
chr8 (82-172)||(24576180-24576270)
chr8 (116-167)||(38606756-38606807)
chr8 (106-167)||(5322087-5322148)
chr8 (82-160)||(15233117-15233195)
chr8 (103-160)||(28700060-28700117)
chr8 (82-158)||(1251610-1251686)
chr8 (191-224)||(1251568-1251601)
chr8 (189-224)||(31596777-31596812)
chr8 (82-173)||(33286116-33286207)
chr8 (189-224)||(38606920-38606955)
chr8 (102-173)||(38606947-38607018)
chr8 (189-223)||(5321939-5321973)
chr8 (109-167)||(26914613-26914671)
chr8 (116-173)||(15233341-15233398)
chr8 (107-167)||(5573704-5573764)
chr8 (129-173)||(6809920-6809964)
[»] scaffold0016 (1 HSPs)
scaffold0016 (123-167)||(49447-49491)
[»] scaffold0251 (1 HSPs)
scaffold0251 (102-160)||(10747-10805)
[»] scaffold0126 (2 HSPs)
scaffold0126 (94-166)||(21424-21496)
scaffold0126 (189-221)||(21575-21607)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35922526 - 35922749
Alignment:
Q  1 aaaaatgttctgttttggaatttagatgccacataccaacccacactcttcagttcctttctctttgacttatannnnnnnaataaagatcgatagacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| |||||||    
T  35922526 aaaaatgttctgttttggaatttagatgccacataccaacccacactcttcagttcctttctctttgacttatatttttttaataaagatcggtagacac 35922625  T
Q  101 acttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccacannnnnnnnaaacaaagtgaccacattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||         ||||||||| ||||||||    
T  35922626 acttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatatggtatgtgtgaccacattttttttgaacaaagtggccacattt 35922725  T
Q  201 tttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||||||||    
T  35922726 tttcagttgcgtgaccactattta 35922749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 43262898 - 43262819
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| ||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||||| |||||| |||||    
T  43262898 tagacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccaca 43262819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 36169312 - 36169391
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||||||||||| || ||||||| |||| |||||||||| |||||||||||||||||||| ||||| |||||    
T  36169312 tagacactcttaatgtgtacttctctttgtaccactttgaaaaattttagttaaccaaatatatggtaggtgtgaccaca 36169391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 15221758 - 15221688
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||    
T  15221758 ttaatgtgtacactcctttgtatcattctgaaaaatttcagttaactaaatatatggtctgtgtgaccaca 15221688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 19621656 - 19621591
Alignment:
Q  108 gtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  19621656 gtgtacactcctttgtaccattctgaaaaatttcagttaaccaaatatatggtatgtgtgaccaca 19621591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 42034950 - 42034887
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgt 166  Q
    |||||| ||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||    
T  42034950 ttaatgcgtacatccctttgtaccactctaaaaaatttcagttgatcaaatatatggtatgtgt 42034887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 35922927 - 35922864
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtg 165  Q
    ||||||||||||| | |||||||||||| |||||||||| |||||||||||| |||||| ||||    
T  35922927 cttaatgtgtacaccgctttgtatcactttgaaaaatttaagttaaccaaatttatggtctgtg 35922864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 33958887 - 33958952
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||| |||||| |||| |||| |||||| ||||||||||||||||| |||||||||||||||||    
T  33958887 tagacacccttaatatgtatatcc-tttgtaccactctgaaaaatttcacttaaccaaatatatggt 33958952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 31189762 - 31189710
Alignment:
Q  108 gtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||| ||||||||| |||| | ||||||||||||||||||||||||||||    
T  31189762 gtgtacacccctttgtaccactttaaaaaatttcagttaaccaaatatatggt 31189710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 16095524 - 16095587
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatat 157  Q
    |||||||| |||||||||||| |||||| || ||||||  ||||||||| ||||||||||||||    
T  16095524 tagacacatttaatgtgtacacccctttctaccactctcgaaaatttcaattaaccaaatatat 16095587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 22169651 - 22169581
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||| |||||| ||||||||| ||||||||||| ||| |||||||||||| |||| |||||||| |||||    
T  22169651 cttaatctgtaca-ccctttgtaccactctgaaaatttttagttaaccaaatttatgatatgtgtgaccaca 22169581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 31189475 - 31189566
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| |  ||||||  ||||| |||||| |  |||||| ||||||  |||||||||||||||||||||||| ||||||||| |||||    
T  31189475 aataaagattggcagacacctttaatatgtacaacattttgtaccactctcgaaaatttcagttaaccaaatatatagtatgtgtgaccaca 31189566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 13312797 - 13312722
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||||||||||    | |||||| ||||||||||||||||||||||||| ||||||| | |||||| |||||    
T  13312797 tagacacccttaatgtgta----cttttgtaccactctgaaaaatttcagttaaccatatatatgatttgtgtgaccaca 13312722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 43461910 - 43461832
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||| | ||||||| ||||||||||  | ||||||||| |||| |  |||||||||||||| ||||||||||||    
T  43461910 aataaagataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatatggt 43461832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 22169439 - 22169474
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    |||| |||||||||||||||||||||||||||||||    
T  22169439 gtgatcacattttttcagttgcgtgaccactattta 22169474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 36169460 - 36169425
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||| ||||||||||||||||||||||||    
T  36169460 gtgaccacattctttcagttgcgtgaccactattta 36169425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 13312730 - 13312696
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  13312730 gtgaccacatttttttagttgcgtgaccactattt 13312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 7156000 - 7156057
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||||||||  |||||| |||| |  |||||||||||||| ||||||||||||    
T  7156000 ttaatgtgtacatctttttgtaccactttagaaaatttcagttaatcaaatatatggt 7156057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 22169368 - 22169433
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatgg 159  Q
    ||||||| ||||||||||||| ||  |||||||| | |  ||||||||||||||| ||||||||||    
T  22169368 tagacacccttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatgg 22169433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 30704321 - 30704362
Alignment:
Q  119 tttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    |||||| ||||||| |||||||||||||| ||||||||||||    
T  30704321 tttgtaccactctgtaaaatttcagttaatcaaatatatggt 30704362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 28805233 - 28805142
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | ||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  28805233 aataaagattggtagacacccttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccaca 28805142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 31303352 - 31303443
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| || ||| |||||    
T  31303352 aataaagattggtagacacccttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaatacatggtctgcgtgaccaca 31303443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 20556665 - 20556743
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||||| ||||||| ||||||||||| ||| |||||| | |||||  |||||||||||||||||||||||||||    
T  20556665 aataaagatcggtagacacccttaatgtgtatatctctttgtgttactctcgaaaatttcagttaaccaaatatatggt 20556743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 21589823 - 21589747
Alignment:
Q  97 acacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||| |||||||||||||||| ||| || |||||| |||||||||||||| ||||||||||||| |||||| |||||    
T  21589823 acacccttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccaca 21589747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 22032980 - 22033050
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||||||||||| |||||| ||||||  ||||||| |||||||||||||||||||||||||| |||||    
T  22032980 cttaatgtgtacatcc-tttgtaccactctttaaaatttaagttaaccaaatatatggtatgtgtgaccaca 22033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 18313026 - 18312956
Alignment:
Q  97 acacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||| ||||||||| |||  |||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  18313026 acactcttaatgtgcacactcctttgtaccactctgaaaaatttcagctaaccaaatatatggtttgtgtg 18312956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 22033254 - 22033190
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||||||||||||| |||||| || |||||||||||| ||||||||||||||||||| ||||||    
T  22033254 cttaatgtgtacatcc-tttgtaccattctgaaaaattttagttaaccaaatatatggtctgtgtg 22033190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 22740069 - 22740146
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||| ||||||||||||| | || ||||||||||||||| |||| |||||| |||||||||||| |||||| |||||    
T  22740069 gacactcttaatgtgtacacctctatgtatcactctgaaatatttaagttaatcaaatatatggtctgtgtgaccaca 22740146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 31303655 - 31303576
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  ||||||| ||||||| ||| || |||||  |||||||||||||||| |||||||||||||||||| |||||    
T  31303655 tagacacctttaatgtctacatccttttataccactcaaaaaaatttcagttaacaaaatatatggtatgtgtgaccaca 31303576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 5174794 - 5174878
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgt 166  Q
    |||||||||| ||| |||  ||||||||||||||| ||||||| ||| ||  |||||||||||||| || ||||||||| |||||    
T  5174794 aataaagatcaataaacattcttaatgtgtacatctctttgtaccacgctcgaaaatttcagttaatcatatatatggtttgtgt 5174878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 18312726 - 18312817
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | ||||||| ||||| ||||| | ||||||||| ||||||  ||||||||| |||| |||||||||||| | |||| |||||    
T  18312726 aataaagattggtagacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatatggtctctgtgaccaca 18312817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 28804893 - 28804972
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||||| |||||| || |||||| || |||  ||||||||||||||||||||||||||| | |||| |||||    
T  28804893 tagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccaca 28804972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 32964954 - 32964875
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  ||||||| |||| || ||||||||||||| |||||||| ||||||| | ||||||||| |||||| |||||    
T  32964954 tagacacctttaatgtatacacccttttgtatcactctaaaaaatttaagttaactatatatatggtctgtgtgaccaca 32964875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 5083721 - 5083778
Alignment:
Q  116 ccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||| | |||| |||||    
T  5083721 ccctttatatcactttgaaaaatttcagttaatcaaatatatggtctttgtgaccaca 5083778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 32964652 - 32964737
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||| | ||||||  |||||||||||||| | |||  | |||||| || ||||| ||||||| ||||||||||||||||||    
T  32964652 aataaagattggtagacatccttaatgtgtacattcatttacaccactctaaagaatttaagttaactaaatatatggtatgtgtg 32964737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 15958485 - 15958433
Alignment:
Q  121 tgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||| ||||||| ||||||||||||||| ||||||||||| |||||| |||||    
T  15958485 tgtaccactctgtaaaatttcagttaactaaatatatggtctgtgtgaccaca 15958433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 5083918 - 5083883
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5083918 gtgaccacattttttcaattgcgtgaccactattta 5083883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 31303435 - 31303470
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||| ||||||||||||||||||    
T  31303435 gtgaccacattttttcaattgcgtgaccactattta 31303470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 4290810 - 4290844
Alignment:
Q  190 tgaccacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||||||| ||||||||||||||    
T  4290810 tgaccacattttttcagttgagtgaccactattta 4290844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 5083980 - 5083910
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||| |||||||||| | |||  ||||||||| || | ||||||||||||||||||| |||||    
T  5083980 ttaatgtatacacccctttgtattattctcgaaaatttcaattcatcaaatatatggtatgtgtgaccaca 5083910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 15958248 - 15958298
Alignment:
Q  123 tatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||||||||| |||||||||||||||||||  ||||| |||||    
T  15958248 tatcactttgaaaaatttaagttaaccaaatatatggtcagtgtgaccaca 15958298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 21548352 - 21548436
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||| |||||||  ||||| | ||||   ||||||| ||||||  |||||||||||||| |||| ||||||||||||||    
T  21548352 aataaagatcggtagacacctttaatatatacacttctttgtaccactcttgaaaatttcagttaatcaaa-atatggtatgtgtg 21548436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 167
Target Start/End: Complemental strand, 21548646 - 21548582
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||| || |||| ||| || ||| |||||||||||||||| ||||||||||| ||||||    
T  21548646 cttaatgtgtatattcctt-gtaccattctaaaaaatttcagttaactaaatatatggtctgtgtg 21548582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 20556949 - 20556909
Alignment:
Q  117 cctttgtatcactctgaaaaatttcagttaaccaaatatat 157  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  20556949 cctttgtatcactttgaaaattttcagttaactaaatatat 20556909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 1400680 - 1400759
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| ||||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  1400680 tagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccaca 1400759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 41212515 - 41212430
Alignment:
Q  88 gatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| ||||| |||||| |||| | ||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  41212515 gatcgattgacacccttaatatgtatacccctttgtaccactctgaaaaatttaagttaaccaaatatatggtctgtgtgaccaca 41212430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 30906261 - 30906183
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||| | || ||||  |||||||||||| || |||||| |||||||||||||||||||||||||||||||||||    
T  30906261 aataaagatgggtacacacctttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggt 30906183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 28527230 - 28527308
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||||| |||||| ||||||||| |||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  28527230 tagacacccttaat-tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatatggtctgtgtgaccaca 28527308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 30905957 - 30906036
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||||| |||||| || |||||| |||||    
T  30905957 tagacactcttaatgtgtacatccctttgtaacattctgaaaatttttagttaaccagatatattgtctgtgtgaccaca 30906036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 33667516 - 33667448
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgt 164  Q
    ||||| |||||| ||||||  | |||||| ||||||||||||||| |||||||||||||||||||||||    
T  33667516 gacacccttaatatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgt 33667448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 34175043 - 34175128
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||| | | |||||  ||||||||||||||||||||||| | |||||||| ||||| ||||| ||||||||| | ||||||    
T  34175043 aataaagataggttgacacttttaatgtgtacatccctttgtattattctgaaaattttcaattaactaaatatatgatttgtgtg 34175128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 43900427 - 43900512
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||| |||||||||  |||||||||| |||  |||||| ||||||  |||||||||| |||| ||||||||||| ||||||    
T  43900427 aataaagattgatagacacttttaatgtgtagatcattttgtaccactctcgaaaatttcaggtaactaaatatatggtctgtgtg 43900512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 45305866 - 45305941
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatat 157  Q
    ||||||||| |||  |||| |||||| ||||||  |||||||| |||||| ||||||||||||||| |||||||||    
T  45305866 aataaagatagatttacacccttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatat 45305941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 33667252 - 33667328
Alignment:
Q  97 acacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||| |||||||| |||||||||||  | |||||| ||||| |||| ||||||||||||||||| ||| || |||||    
T  33667252 acacccttaatgtctacatccctttacaccactctaaaaaaattcaattaaccaaatatatggtttgtatgaccaca 33667328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 1400751 - 1400785
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  1400751 gtgaccacattttttaagttgcgtgaccactattt 1400785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 28527300 - 28527334
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  28527300 gtgaccacatttttttagttgcgtgaccactattt 28527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 7378656 - 7378592
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||| || ||||| |||| | || || ||||||||||||||||| ||||||||||| ||||||    
T  7378656 ttaatgcgtccatccttttgcaccattcagaaaaatttcagttaacaaaatatatggtttgtgtg 7378592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 7915596 - 7915682
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctg-aaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||| |||||||  |||||||||||| || |||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  7915596 aataaagatcggtagacacctttaatgtgtacacccttttgtatcactctgaaaaaatttcagttaatcaaatatgtggtatgtgtg 7915682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 20084589 - 20084666
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||| |||||||||||||||||||| || ||  ||||||||||| |||||||||||||||||||||||||| |||||    
T  20084589 gacacccttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatatggtatgtgtgaccaca 20084666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 24386412 - 24386335
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||| |||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||| |||||| |||||    
T  24386412 gacacccttaatgtgtacatccctttataccacgctgaaaaatttaagttaaccaaatatatggtctgtgtgaccaca 24386335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 3222332 - 3222421
Alignment:
Q  83 ataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||| ||||||||| ||||||||||||| |||||||||| ||||| ||||||||||  |||||||||||||||| | |||| |||||    
T  3222332 ataaagattgatagacacccttaatgtgtaca-ccctttgtattactcttaaaaatttcaaataaccaaatatatggtgtctgtgaccaca 3222421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 9068599 - 9068529
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||||||| || |||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||    
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccaca 9068529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 22608280 - 22608345
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||| ||||||    
T  22608280 cttaatgtgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtctgtgtg 22608345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 11108076 - 11108155
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||||||||||||| |  |||||  |||||||||||||||| ||||||||||||||||| |||||| |||||    
T  11108076 tagacactcttaatgtgtacattcacttgtactactctgaaaaatttcaattaaccaaatatatggtctgtgtgaccaca 11108155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 10304629 - 10304686
Alignment:
Q  116 ccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||    
T  10304629 ccctttgtaccactctaaaaaatttcagttaaccaaatatatggtctgtgtgaccaca 10304686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 7706758 - 7706849
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| |||| ||||  ||||||||||||||| |||||| || |||||||||||| ||||||   |||||||||| |||||| |||||    
T  7706758 aataaagattgataaacacctttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccaca 7706849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 2430513 - 2430587
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctg-aaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||| |||||||||||||| |||||||| || |||| |||||||||||||||| ||||||||| | ||||||    
T  2430513 tagacacccttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatatgatctgtgtg 2430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 7915798 - 7915717
Alignment:
Q  92 gatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||  ||||||||||||| ||  || || |||||||||||||||||||||| ||||||||| || |||||| |||||    
T  7915798 gatagacattcttaatgtgtacaccctcttttaccactctgaaaaatttcagttaatcaaatatatcgtctgtgtgaccaca 7915717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 13767116 - 13767180
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||| || ||||||||||  |||||||||||||||  ||||||| |||||||||||||||||||    
T  13767116 gacactctaaatgtgtacactcctttgtatcactctagaaaatttaagttaaccaaatatatggt 13767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 23595074 - 23595138
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||||||||| || |||||||||||||  ||||||| ||||||| ||||||||||| ||||||    
T  23595074 ttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtg 23595138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 3222413 - 3222448
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  3222413 gtgaccacattttttcagttgcgtgaccactattta 3222448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 11108286 - 11108195
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||||  ||||||| ||||||||||| |||  ||||||| | ||| ||||| |||| ||||||||||||||| | |||||| |||||    
T  11108286 aataaagatcagtagacacccttaatgtgtatatctttttgtattattctaaaaaaattcaattaaccaaatatatgatttgtgtgaccaca 11108195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 23595336 - 23595265
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||| |||||| || ||||||| ||||| |||||||||| |||||||||||||| || |||||| |||||    
T  23595336 cttaatatgtacacccttttgtattactctaaaaaatttcaattaaccaaatatatagtctgtgtgaccaca 23595265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 30056032 - 30056111
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  ||||||| |||  |||||||||  ||||| |||||||||||||||||||||||||||| | |||| |||||    
T  30056032 tagacacctttaatgtatactcccctttgtacaactctaaaaaatttcagttaaccaaatatatggtctatgtgaccaca 30056111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 33815143 - 33815108
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  33815143 gtgaccacattttttcagttgcgtgaccactattta 33815108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 2430684 - 2430650
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    |||||||||||||||||||||||||||||||||||    
T  2430684 gtgaccacattttttcagttgcgtgaccactattt 2430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 2835157 - 2835103
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatata 156  Q
    ||||||||||| |||  |||||| ||||||||||||||| |||||||||||||||    
T  2835157 cttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatata 2835103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 22608566 - 22608505
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatat 155  Q
    |||||||  ||||| |||||| |||||||||||| | |||||| ||||||||||||||||||    
T  22608566 tagacacttttaatatgtacacccctttgtatcattttgaaaattttcagttaaccaaatat 22608505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 138878 - 138826
Alignment:
Q  106 atgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatg 158  Q
    ||||||||| |||||||||  ||||| ||||| ||||||||||||||||||||    
T  138878 atgtgtacacccctttgtactactctaaaaaaattcagttaaccaaatatatg 138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 146899 - 146847
Alignment:
Q  106 atgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatg 158  Q
    ||||||||| |||||||||  ||||| ||||| ||||||||||||||||||||    
T  146899 atgtgtacacccctttgtactactctaaaaaaattcagttaaccaaatatatg 146847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 3222624 - 3222556
Alignment:
Q  105 aatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||||| | ||||||||||||| |||||  | |||||| |||||||||||| |||||| |||||    
T  3222624 aatgtgtacattcgtttgtatcactctaaaaaagattagttaatcaaatatatggtctgtgtgaccaca 3222556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 10304827 - 10304792
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||||||||||||| |||||||||    
T  10304827 gtgaccacattttttcagttgcgtgatcactattta 10304792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 9068537 - 9068503
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  9068537 gtgaccacatttttttagttgcgtgaccactattt 9068503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 219
Target Start/End: Complemental strand, 11108203 - 11108173
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccact 219  Q
    |||||||||||||||||||||||||||||||    
T  11108203 gtgaccacattttttcagttgcgtgaccact 11108173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 3620674 - 3620739
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||||||||||||| ||| || |||||||||   ||| |||||| |||||||||||| ||||||    
T  3620674 cttaatgtgtacatccatttataccactctgaatttttttagttaaacaaatatatggtttgtgtg 3620739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 9474545 - 9474598
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactct-gaaaaatttcagtta 146  Q
    ||||||| |||||||| ||||||| |||||| |||||| |||||||||||||||    
T  9474545 tagacactcttaatgtatacatccttttgtaccactcttgaaaaatttcagtta 9474598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 2365677 - 2365649
Alignment:
Q  189 gtgaccacattttttcagttgcgtgacca 217  Q
    |||||||||||||||||||||||||||||    
T  2365677 gtgaccacattttttcagttgcgtgacca 2365649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 9710928 - 9710850
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||| | |||| || |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  9710928 aataaagattggtagaaacccttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatatggt 9710850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 3785861 - 3785952
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | ||||||| ||||||||||||| ||||||||| ||||||  |||||||||||||||||| | |||||| |||||| |||||    
T  3785861 aataaagattggtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccaca 3785952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 3823562 - 3823641
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| ||||||||||||| ||||||||| ||||||  |||||||||||||||||| |||||||| |||||| |||||    
T  3823562 tagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccaca 3823641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 11509804 - 11509875
Alignment:
Q  84 taaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatat 155  Q
    ||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||  |||||||||||    
T  11509804 taaagattgatagacacacttaatgtgtacacccctttgtaccactcttaaaaatttcaaataaccaaatat 11509875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 44080155 - 44080230
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatat 157  Q
    |||||||||||||||| |  ||||||||||||||  ||||||| ||||||||| ||||||||||||||||||||||    
T  44080155 aataaagatcgatagatatccttaatgtgtacatatctttgtaccactctgaacaatttcagttaaccaaatatat 44080230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 19280400 - 19280327
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||| ||||||||||||| || |||||| ||||||||||| ||| |||||| |||||||||||| ||||||    
T  19280400 tagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtg 19280327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 18733677 - 18733598
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  |||||||||||| |||||| || || |||||||||||| ||||||| |||||||||||||| ||| |||||    
T  18733677 tagacacctttaatgtgtacacccctttataccattctgaaaaatttaagttaactaaatatatggtatgggtgaccaca 18733598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 1705863 - 1705793
Alignment:
Q  97 acacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||| |||||||||||||||| | ||||||| | | |||||||||||||||||||||| ||| ||||||||    
T  1705863 acacccttaatgtgtacatccttgtgtatcattgtaaaaaatttcagttaaccaaatacatgatatgtgtg 1705793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 27335309 - 27335379
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||||||| ||||||||| || |||||||| ||| ||||||||||  |||||||||||||| |||||    
T  27335309 ttaatgtgtacacccctttgtaccattctgaaaattttgagttaaccaataatatggtatgtgtgaccaca 27335379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 31545810 - 31545740
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||| |||||||||| | |||| |||||    
T  31545810 ttaatatgtacatctttttgtatcactctgaaaaatttcaggtaacctaatatatggtctatgtgaccaca 31545740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 5342069 - 5342000
Alignment:
Q  104 taatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||| ||||| |||||||||  ||||||||||||||||||||| | |||||||||| |||||| |||||    
T  5342069 taatgcgtacacccctttgtacgactctgaaaaatttcagttaatcgaatatatggtctgtgtgaccaca 5342000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 26308824 - 26308759
Alignment:
Q  108 gtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| | |||||||| |||||||||| |||||||||| |||||||||||| |||||| |||||    
T  26308824 gtgtacacctctttgtataactctgaaaattttcagttaatcaaatatatggtttgtgtggccaca 26308759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 19280099 - 19280188
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||||| ||||||| ||||| ||||||| ||||||||| ||  || ||| |||| ||||||||||||||||||| || ||| |||||    
T  19280099 aataaagatcggtagacacccttaaagtgtacacccctttgtacca--ctaaaatattttagttaaccaaatatatggtctgagtgaccaca 19280188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 42637865 - 42637926
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatat 157  Q
    ||||||| ||||||||| ||||||||||||| ||  ||||||||||||| ||||||||||||||    
T  42637865 tagacacccttaatgtgcacatccctttgtacca--ctgaaaaatttcaattaaccaaatatat 42637926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 22432531 - 22432460
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||| ||||||||||||| || |||||| |||| |||||||||| ||| || |||||||||||| ||||||    
T  22432531 gacactcttaatgtgtacacccttttgtagcactttgaaaaatttgagtaaatcaaatatatggtctgtgtg 22432460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 26308571 - 26308625
Alignment:
Q  119 tttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||||| |||||||| ||||||||| ||||||||||| |||||| |||||    
T  26308571 tttgtatcactttgaaaaatatcagttaactaaatatatggtttgtgtgaccaca 26308625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 42638082 - 42638048
Alignment:
Q  190 tgaccacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||||||||||||||||||||||    
T  42638082 tgaccacattttttcagttgcgtgaccactattta 42638048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 11501241 - 11501298
Alignment:
Q  116 ccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| ||||||||||| |||||  |||||||||||||||| |||||| |||||    
T  11501241 ccctttgtaccactctgaaaattttcaaataaccaaatatatggtctgtgtgaccaca 11501298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 27040797 - 27040712
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||| | | ||||| || ||||||||||| ||||||||  |||||  |||||||| |||||||||||||||| | ||||||    
T  27040797 aataaagataggttgacactctcaatgtgtacattcctttgtactactctagaaaatttcggttaaccaaatatatgatctgtgtg 27040712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 31545425 - 31545498
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatat 155  Q
    ||||||||| | |||||||  |||||||||| |||||||||||  |||||  |||||||||||||| |||||||    
T  31545425 aataaagattggtagacacctttaatgtgtatatccctttgtactactctcgaaaatttcagttaatcaaatat 31545498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 39126359 - 39126295
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||||   |||||||| | |||||||||||| ||||||||||||||||| | ||||||    
T  39126359 ttaatgtgtacacttctttgtattattctgaaaaatttaagttaaccaaatatatgatctgtgtg 39126295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 3823633 - 3823668
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||| |||||||||||||||||||    
T  3823633 gtgaccacattttttctgttgcgtgaccactattta 3823668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 11501471 - 11501400
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||||||||||||||||  ||||| || |||| |  ||||||| ||||||||||||||||| | ||||||    
T  11501471 gacacacttaatgtgtacactcctttataccactttagaaaatttaagttaaccaaatatatgatctgtgtg 11501400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 3823854 - 3823776
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccac 172  Q
    ||||||| |||||| ||| || || ||||||  |||| |||||||| ||||||||||||||||| || |||||| ||||    
T  3823854 tagacacccttaatatgttcacccgtttgtactactcagaaaaattccagttaaccaaatatattgtctgtgtgaccac 3823776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 33488439 - 33488369
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgt 164  Q
    |||||||  |||||||||| |  | ||| ||| |||||||||||||| ||||||| |||||||||||||||    
T  33488439 tagacacctttaatgtgtatactcatttatataactctgaaaaatttaagttaactaaatatatggtatgt 33488369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 19624500 - 19624440
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatg 163  Q
    |||||||||||||||| ||||||  || ||||||| ||| | ||||||||||||||||||||    
T  19624500 cttaatgtgtacatcc-tttgtacaacgctgaaaattttaatttaaccaaatatatggtatg 19624440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 1705593 - 1705649
Alignment:
Q  111 tacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||| |||||| || ||||||||||||||| |||| || ||||||||||| ||||||    
T  1705593 tacacccctttctaccactctgaaaaatttaagtttactaaatatatggtttgtgtg 1705649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 19280179 - 19280215
Alignment:
Q  188 agtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  19280179 agtgaccacattttttcagatgcgtgaccactgttta 19280215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 41571828 - 41571860
Alignment:
Q  192 accacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||| |||||||||||||||    
T  41571828 accacattttttcagttacgtgaccactattta 41571860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 16583496 - 16583573
Alignment:
Q  83 ataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    |||||||| | ||||||| ||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  16583496 ataaagattggtagacacccttaatgcgtacatccctttgtaccactctcgaaaatttcagttaaccaaatatatggt 16583573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 17633531 - 17633460
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||||| |||||| |||||    
T  17633531 cttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccaca 17633460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 24669363 - 24669297
Alignment:
Q  107 tgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||| ||||||||| ||||||||||||||| |||||| |||||||||||| |||||| |||||    
T  24669363 tgtgtacacccctttgtaccactctgaaaaatttaagttaatcaaatatatggtctgtgtgaccaca 24669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 42908745 - 42908691
Alignment:
Q  119 tttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  42908745 tttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccaca 42908691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 19596680 - 19596757
Alignment:
Q  83 ataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    |||||||| ||||||||   |||||||||||| ||||||||| ||||||||||||| || ||| ||||||||||||||    
T  19596680 ataaagattgatagacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggt 19596757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 1966741 - 1966819
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| |||| ||| |||| || |||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  1966741 tagacacccttactgtatacacccttttgtaccactctgaaaa-tttcagttaaccaaatatatggtctgtgtgaccaca 1966819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 19596978 - 19596907
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||||||||||| |||||| |  | || |||||||||||||||||||||||||||| ||||| |||||    
T  19596978 cttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccaca 19596907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 17633257 - 17633327
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||||||  | |||||| ||||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  17633257 ttaatgtgtacactcatttgtaccactccgaaaaattttagttaaccaaatatatggtctgtgtgaccaca 17633327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 25007711 - 25007634
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||| | ||||||| |||||||| |||| ||||||||| || |||  |||||||||||||||||||||||||||    
T  25007711 aataaagattggtagacactcttaatgtataca-ccctttgtaccattctcgaaaatttcagttaaccaaatatatggt 25007634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 20871743 - 20871827
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgt 166  Q
    ||||||||| ||||||||  ||| |||||||| ||  ||| ||  |||||||||||||||| |||| ||||||||||||||||||    
T  20871743 aataaagattgatagacatgcttgatgtgtacgtctttttatactactctgaaaaatttcaattaatcaaatatatggtatgtgt 20871827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 9809056 - 9809091
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  9809056 gtgaccacattttttcagttgcgtgaccactattta 9809091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 16583578 - 16583613
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  16583578 gtgaccacattttttcagttgcgtgaccactattta 16583613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 19747020 - 19746941
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  |||||||||||| |||||||||||| |||  ||||||||||||||| ||||| ||||| ||| || |||||    
T  19747020 tagacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtctgtttgaccaca 19746941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 19792786 - 19792865
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  |||||||||||| |||||||||||| |||  ||||||||||||||| ||||| ||||| ||| || |||||    
T  19792786 tagacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtctgtttgaccaca 19792865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 24669305 - 24669270
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  24669305 gtgaccacattttttcagttgcgtgaccactattta 24669270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 9810659 - 9810737
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||| | | ||||| |||||| |||||| || |||||| |||| |||||||||||||||||  |||||||||||    
T  9810659 aataaagataggttgacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatatggt 9810737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 24669155 - 24669189
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    |||||||||||||||||||||||||||||||||||    
T  24669155 gtgaccacattttttcagttgcgtgaccactattt 24669189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 8741001 - 8740916
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||| ||||||   | ||||||||||| | ||||||||||||| |||| |||||||||| ||||| |||| | ||||||    
T  8741001 aataaagatcggtagacatcttcaatgtgtacattcttttgtatcactctcaaaattttcagttaatcaaatgtatgatctgtgtg 8740916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 14351265 - 14351192
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||| |||||||||| ||   ||||||| |||||| ||||| || ||||||||||||||||||| ||||||    
T  14351265 tagacacccttaatgtgtgcacttctttgtaccactctcaaaaaatttagttaaccaaatatatggtttgtgtg 14351192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 9810745 - 9810777
Alignment:
Q  192 accacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||||||||||||||||||||    
T  9810745 accacattttttcagttgcgtgaccactattta 9810777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 9808973 - 9809064
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | | ||||| |||||| |||||| || |||||| | || ||||||| |||||||||| ||||||||||| || ||| |||||    
T  9808973 aataaagataggttgacacccttaatatgtacacccttttgtaccgctatgaaaaaattcagttaactaaatatatggtctgcgtgaccaca 9809064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 55667014 - 55666943
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||| ||||||  |||||||| |||| |  ||||||||||||||| ||||||||||| |||||| |||||    
T  55667014 cttaatatgtacactcctttgtaccactttcgaaaatttcagttaactaaatatatggtctgtgtgaccaca 55666943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 35544578 - 35544544
Alignment:
Q  133 aaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||||||| |||||||||||||||||||    
T  35544578 aaaaatttcagttaatcaaatatatggtatgtgtg 35544544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 17633468 - 17633439
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccac 218  Q
    ||||||||||||||||||||||||||||||    
T  17633468 gtgaccacattttttcagttgcgtgaccac 17633439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 23048937 - 23048989
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaa 134  Q
    ||||||||| ||||||||  ||||||||||||| || |||||| |||||||||    
T  23048937 aataaagattgatagacattcttaatgtgtacacccgtttgtaacactctgaa 23048989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 404 - 328
Alignment:
Q  97 acacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||| |||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  404 acacccttaatttgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtctgtgtggccaca 328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 123 - 180
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactct-gaaaaatttcagttaaccaaatatatgg 159  Q
    |||||||||||||   |||||| |||||| ||||||||||||||||||||||||||||    
T  123 ttaatgtgtacatttttttgtaccactcttgaaaaatttcagttaaccaaatatatgg 180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 5831726 - 5831662
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  5831726 ttaacgtgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatatggtctgtgtg 5831662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 5855006 - 5855096
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | ||||||| |||||||| ||||||||||||||  ||| ||||||||||||| |||||||||||||||| |||||| |||||    
T  5855006 aataaagataggtagacacgcttaatgtttacatccctttgtactact-tgaaaaatttcagctaaccaaatatatggtctgtgtgaccaca 5855096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 34490391 - 34490312
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||| ||||||||||||| | ||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||    
T  34490391 tagacactcttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccaca 34490312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 13350902 - 13350967
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||||| || |||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  13350902 cttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtg 13350967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 29676992 - 29677071
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||  ||||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||  |||||| |||||    
T  29676992 tagacacctttaatgtgtacgtccctttgtagcactttgaaaaattttagttaaccaaatatatggcctgtgtgaccaca 29677071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 517623 - 517539
Alignment:
Q  84 taaagatcgatagacacacttaatgtgtacatc---cctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtg 165  Q
    ||||||||||||||||  |||||||||||||||     ||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  517623 taaagatcgatagacatccttaatgtgtacatcatttatttgtatcactctcaaaaatttaagttaaccaaatatatgatatgtg 517539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 5855282 - 5855228
Alignment:
Q  119 tttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  5855282 tttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccaca 5855228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 13351079 - 13351009
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||| | |||| |||||    
T  13351079 ttaatgtgtacacccctttgtaccactctgaaaaatttaacttaaccaaatatatggtctttgtgaccaca 13351009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 34941719 - 34941762
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagtt 145  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  34941719 cttaatgtgtacatccctttgtaccactctgaaaaatttcagtt 34941762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 38952112 - 38952037
Alignment:
Q  92 gatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||  ||||| || |||| | ||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  38952112 gatagacaaccttaaagtatacacctctttgtatcactctgaaaaatttcagttaacaaaatgtatggtatatgtg 38952037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 34364431 - 34364369
Alignment:
Q  96 gacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatg 158  Q
    |||||| |||| |||||||||||||||||  |||||||||||||| |||||| ||||||||||    
T  34364431 gacacatttaacgtgtacatccctttgtactactctgaaaaatttaagttaatcaaatatatg 34364369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 29677264 - 29677206
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||||||| | ||||||| |||||| |||||||| |||||| ||||||||||||    
T  29677264 cttaatgtgtacacctctttgtaccactctcaaaaatttaagttaaacaaatatatggt 29677206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 5831432 - 5831516
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||| | |||||||  |||||| ||||| || |||||| || |||||||||||| ||||||| ||| ||||||||||||||    
T  5831432 aataaagattggtagacact-ttaatgagtacacccttttgtaacattctgaaaaattttagttaactaaagatatggtatgtgtg 5831516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 25238653 - 25238600
Alignment:
Q  120 ttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||| |||||||||||||||||||||| |||||||||||| | |||| |||||    
T  25238653 ttgtaccactctgaaaaatttcagttaatcaaatatatggtttctgtgaccaca 25238600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 28499720 - 28499663
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    |||| |||||||||  |||||| || ||| ||||||||||||||||||||||||||||    
T  28499720 ttaacgtgtacatcattttgtaccattctaaaaaatttcagttaaccaaatatatggt 28499663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 34490100 - 34490173
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||| ||||||||||| |||  || ||| |||| || ||||||||||||||| ||||||||||| ||||||    
T  34490100 tagacacccttaatgtgtatatcttttggtaccactatgtaaaatttcagttaactaaatatatggtctgtgtg 34490173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 38244833 - 38244801
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactat 221  Q
    |||||||||||||||||||||||||||||||||    
T  38244833 gtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 9929904 - 9929870
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    ||||||||||||||||| |||||||||||||||||    
T  9929904 gtgaccacattttttcatttgcgtgaccactattt 9929870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 29167754 - 29167796
Alignment:
Q  131 tgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||||||||||||||||| ||||||||||| |||||| |||||    
T  29167754 tgaaaaatttcagttaactaaatatatggtttgtgtgaccaca 29167796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Complemental strand, 29167931 - 29167901
Alignment:
Q  194 cacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||||||||||||||||||    
T  29167931 cacattttttcagttgcgtgaccactattta 29167901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 2995919 - 2995991
Alignment:
Q  100 cacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||| ||||||||||||| |||||| |||| ||||||| || | |||| |||||||||||| |||||| |||||    
T  2995919 cactcaatgtgtacatccttttgtaccactttgaaaaaatttaattaatcaaatatatggt-tgtgtgaccaca 2995991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 9468064 - 9468093
Alignment:
Q  138 tttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||||||||||||||||||||||||    
T  9468064 tttcagttaaccaaatatatggtatgtgtg 9468093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 34364132 - 34364217
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||| | | |||||  ||||| || |||||  |||||| ||||||| ||||||| ||||||| ||||||||||| ||||||    
T  34364132 aataaagataggttgacaccattaatatgcacatctatttgtaccactctggaaaatttaagttaactaaatatatggtctgtgtg 34364217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 42604128 - 42604188
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtat 162  Q
    ||||||||||||| || |||||| || | | |||||||||| |||||||||| ||||||||    
T  42604128 cttaatgtgtacacccatttgtaccattttaaaaaatttcaattaaccaaatgtatggtat 42604188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 31596694 - 31596785
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | ||||||| |||||| |||||| | ||||||| |||| ||||||||| ||||||| ||||||||||||||||||| |||||    
T  31596694 aataaagattggtagacactcttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatatggtatgtgtgaccaca 31596785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 24576270 - 24576180
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccac 172  Q
    ||||||||| | ||||||| | ||||||||||| ||||||||| ||||||  ||||||||| ||||||||||||||||| |||||| ||||    
T  24576270 aataaagattggtagacacccgtaatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtctgtgtgaccac 24576180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 38606756 - 38606807
Alignment:
Q  116 ccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  38606756 ccctttgtaccactctgaaaaatttcagttaactaaatatatggtatgtgtg 38606807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 5322148 - 5322087
Alignment:
Q  106 atgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||||||  ||||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  5322148 atgtgtacactcctttgtatcactctcaaaaatttcaattaaccaaatatatggtctgtgtg 5322087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 15233117 - 15233195
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||| ||| || ||  |||||||||||||| ||| ||| || ||||||||||||||||||| ||||||||||||    
T  15233117 aataaagatggatggatacctttaatgtgtacatctcttcgtaccaatctgaaaaatttcagttaatcaaatatatggt 15233195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 28700060 - 28700117
Alignment:
Q  103 ttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    ||||||||||||||  ||||||||| ||| |||||||||||||||| |||||||||||    
T  28700060 ttaatgtgtacatcattttgtatcattctaaaaaatttcagttaactaaatatatggt 28700117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 1251686 - 1251610
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatg 158  Q
    ||||||||| | ||||||  ||||||||||||| || |||||| ||||||  ||||||||||||||| |||||||||    
T  1251686 aataaagattggtagacatccttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatg 1251610  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 1251601 - 1251568
Alignment:
Q  191 gaccacattttttcagttgcgtgaccactattta 224  Q
    ||||||||||||||||||||||||||||||||||    
T  1251601 gaccacattttttcagttgcgtgaccactattta 1251568  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 31596777 - 31596812
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||||||||||| |||||||||||    
T  31596777 gtgaccacattttttcagttgcgttaccactattta 31596812  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 33286116 - 33286207
Alignment:
Q  82 aataaagatcgatagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| | | ||||| ||||||||||||| || |||||| | |||| ||||| || | ||||||||||||||||| || ||| |||||    
T  33286116 aataaagattggtggacacccttaatgtgtacacccatttgtacccctctaaaaaaatttaattaaccaaatatatggtctgcgtgaccaca 33286207  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 38606955 - 38606920
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattta 224  Q
    |||||||||||||||||||||||| |||||||||||    
T  38606955 gtgaccacattttttcagttgcgttaccactattta 38606920  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 38607018 - 38606947
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||||||| |||||||||  |||||  ||||||||||||||| | ||||||||| || ||| |||||    
T  38607018 cttaatgtgtacacccctttgtacaactctccaaaatttcagttaactacatatatggtttgcgtgaccaca 38606947  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 5321939 - 5321973
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactattt 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  5321939 gtgaccacatttttttagttgcgtgaccactattt 5321973  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 26914613 - 26914671
Alignment:
Q  109 tgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||||||||||| || |||||||||||||| || |||| ||||||||| | ||||||    
T  26914613 tgtacatccctttgcattactctgaaaaatttaagctaactaaatatatgatttgtgtg 26914671  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 15233398 - 15233341
Alignment:
Q  116 ccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    ||||||||| ||||||||||||||| ||||||  |||||||| || |||||| |||||    
T  15233398 ccctttgtaccactctgaaaaattttagttaattaaatatatagtttgtgtgaccaca 15233341  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 5573704 - 5573764
Alignment:
Q  107 tgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    |||||||| || ||||||||| |||  || |||||||||||||||||||||| ||| ||||    
T  5573704 tgtgtacacccttttgtatcattctcgaacatttcagttaaccaaatatatgatatatgtg 5573764  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 6809964 - 6809920
Alignment:
Q  129 tctgaaaaatttcagttaaccaaatatatggtatgtgtgcccaca 173  Q
    |||| |||||||||||||| ||||||||| ||||||||| |||||    
T  6809964 tctggaaaatttcagttaatcaaatatatagtatgtgtgaccaca 6809920  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 49447 - 49491
Alignment:
Q  123 tatcactctgaaaaatttcagttaaccaaatatatggtatgtgtg 167  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||    
T  49447 tatcattctgaaaaatttaagttaaccaaatatatggtatgtgtg 49491  T

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Target: scaffold0251 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 10805 - 10747
Alignment:
Q  102 cttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggt 160  Q
    |||||| ||||||| |||||||| ||||||  ||||||||| |||||||||||||||||    
T  10805 cttaatatgtacattcctttgtaccactctagaaaatttcaattaaccaaatatatggt 10747  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 21424 - 21496
Alignment:
Q  94 tagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaaccaaatatatggtatgtgt 166  Q
    |||||||  ||||||||||||||| ||| || || | | |||||||||||||||||||||||| ||| |||||    
T  21424 tagacacttttaatgtgtacatccatttataccattttaaaaaatttcagttaaccaaatatacggtctgtgt 21496  T

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Target: scaffold0126; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 21607 - 21575
Alignment:
Q  189 gtgaccacattttttcagttgcgtgaccactat 221  Q
    |||||||||||||||||||||||||||||||||    
T  21607 gtgaccacattttttcagttgcgtgaccactat 21575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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